miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26402 3' -57.2 NC_005345.2 + 20822 0.66 0.628596
Target:  5'- uCGCGcucGUCgUCGuCCUGgucgucgucgccgucGCCCUUGGCg -3'
miRNA:   3'- -GCGC---CAGgAGCuGGAC---------------UGGGAACUGg -5'
26402 3' -57.2 NC_005345.2 + 5442 0.66 0.624272
Target:  5'- gGCGGcgCCcgggUCGGCCguaggggcgGugCCgagUGACCg -3'
miRNA:   3'- gCGCCa-GG----AGCUGGa--------CugGGa--ACUGG- -5'
26402 3' -57.2 NC_005345.2 + 38048 0.66 0.613466
Target:  5'- gCGCGGcgacccaacUUC-CGACCgUGACCCacaGGCCg -3'
miRNA:   3'- -GCGCC---------AGGaGCUGG-ACUGGGaa-CUGG- -5'
26402 3' -57.2 NC_005345.2 + 38759 0.66 0.59191
Target:  5'- aCGCGaaCCUUGACCUGcGCCUcuUUGuCCu -3'
miRNA:   3'- -GCGCcaGGAGCUGGAC-UGGG--AACuGG- -5'
26402 3' -57.2 NC_005345.2 + 15228 0.66 0.581177
Target:  5'- uCGC-GUCCUUGACCauGCCCguacgGAUCa -3'
miRNA:   3'- -GCGcCAGGAGCUGGacUGGGaa---CUGG- -5'
26402 3' -57.2 NC_005345.2 + 11276 0.66 0.581177
Target:  5'- cCGCGaccGUCCg-GGCCUGAgCCUcgccGGCCg -3'
miRNA:   3'- -GCGC---CAGGagCUGGACUgGGAa---CUGG- -5'
26402 3' -57.2 NC_005345.2 + 5288 0.66 0.581177
Target:  5'- cCGCGGagUCC-CGGCCgacGCCCcgucGACCg -3'
miRNA:   3'- -GCGCC--AGGaGCUGGac-UGGGaa--CUGG- -5'
26402 3' -57.2 NC_005345.2 + 7889 0.67 0.571552
Target:  5'- cCGcCGGUCCccgacacggugaugaCGACCUGAUcgccugCCUUGGCUc -3'
miRNA:   3'- -GC-GCCAGGa--------------GCUGGACUG------GGAACUGG- -5'
26402 3' -57.2 NC_005345.2 + 15874 0.67 0.570485
Target:  5'- cCGCa-UCCUCGACaugGACCCggGcACCg -3'
miRNA:   3'- -GCGccAGGAGCUGga-CUGGGaaC-UGG- -5'
26402 3' -57.2 NC_005345.2 + 14637 0.67 0.559842
Target:  5'- cCGCGGcccgCCUCGACCgcguCCUcgGcACCg -3'
miRNA:   3'- -GCGCCa---GGAGCUGGacu-GGGaaC-UGG- -5'
26402 3' -57.2 NC_005345.2 + 37845 0.67 0.537681
Target:  5'- gGCGGgCCUugaucucCGACCUG-CUCUUGuuGCCg -3'
miRNA:   3'- gCGCCaGGA-------GCUGGACuGGGAAC--UGG- -5'
26402 3' -57.2 NC_005345.2 + 31633 0.68 0.517896
Target:  5'- -aCGGUCCUCG-CCcGGCCggcGACCg -3'
miRNA:   3'- gcGCCAGGAGCuGGaCUGGgaaCUGG- -5'
26402 3' -57.2 NC_005345.2 + 18764 0.68 0.507599
Target:  5'- uCGaGGUacgCCUCGACCUGcGCCCgccgcgGGCUg -3'
miRNA:   3'- -GCgCCA---GGAGCUGGAC-UGGGaa----CUGG- -5'
26402 3' -57.2 NC_005345.2 + 27105 0.68 0.507599
Target:  5'- cCGCGGUCggcucgugagCUCGGCCggGACCgUccggcgGGCCc -3'
miRNA:   3'- -GCGCCAG----------GAGCUGGa-CUGGgAa-----CUGG- -5'
26402 3' -57.2 NC_005345.2 + 32083 0.68 0.507599
Target:  5'- aGCGaGUCCcgCGACCagGACUC--GACCg -3'
miRNA:   3'- gCGC-CAGGa-GCUGGa-CUGGGaaCUGG- -5'
26402 3' -57.2 NC_005345.2 + 12221 0.68 0.507599
Target:  5'- cCGCGG---UCGGCCgGACUC-UGACCg -3'
miRNA:   3'- -GCGCCaggAGCUGGaCUGGGaACUGG- -5'
26402 3' -57.2 NC_005345.2 + 32494 0.68 0.49739
Target:  5'- gCGCGG-CCUCGACCgUGAUgacgaacagcaCCggagUGACg -3'
miRNA:   3'- -GCGCCaGGAGCUGG-ACUG-----------GGa---ACUGg -5'
26402 3' -57.2 NC_005345.2 + 46862 0.68 0.49739
Target:  5'- gCGCGGUCU--GACC-GACCCgcaggggUGACa -3'
miRNA:   3'- -GCGCCAGGagCUGGaCUGGGa------ACUGg -5'
26402 3' -57.2 NC_005345.2 + 634 0.68 0.49739
Target:  5'- uCGC-GUCCUCGGCCUGcgGCgUgagcggGACCg -3'
miRNA:   3'- -GCGcCAGGAGCUGGAC--UGgGaa----CUGG- -5'
26402 3' -57.2 NC_005345.2 + 27015 0.68 0.487275
Target:  5'- aCGCGGucgaguUCCUCGAUCgggucGugCCggucguugUGGCCa -3'
miRNA:   3'- -GCGCC------AGGAGCUGGa----CugGGa-------ACUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.