miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26402 5' -53.4 NC_005345.2 + 17863 0.66 0.799723
Target:  5'- gGCGG-GAauccucGGGGuCCgCCGUGgcGUAGUCg -3'
miRNA:   3'- -CGCCaCU------UCCU-GG-GGCAUuuCGUCAG- -5'
26402 5' -53.4 NC_005345.2 + 22693 0.66 0.789785
Target:  5'- gGCGGUGAagcGGGGCggCGUGuGGCAugacGUCa -3'
miRNA:   3'- -CGCCACU---UCCUGggGCAUuUCGU----CAG- -5'
26402 5' -53.4 NC_005345.2 + 20344 0.66 0.779675
Target:  5'- cGCGGUGc-GGACCuugCCGUGcguGAGCA-UCg -3'
miRNA:   3'- -CGCCACuuCCUGG---GGCAU---UUCGUcAG- -5'
26402 5' -53.4 NC_005345.2 + 40677 0.66 0.779675
Target:  5'- cGCGG-GGAGaACCCCGaaacGGgAGUCg -3'
miRNA:   3'- -CGCCaCUUCcUGGGGCauu-UCgUCAG- -5'
26402 5' -53.4 NC_005345.2 + 38277 0.66 0.769406
Target:  5'- uGCGGgcacGGGACgcgCCgCGUGcGGCAGUCc -3'
miRNA:   3'- -CGCCacu-UCCUG---GG-GCAUuUCGUCAG- -5'
26402 5' -53.4 NC_005345.2 + 3440 0.66 0.769406
Target:  5'- gGCGGcGAugcGGGCCCCGagcucgcgcGGGCuGUCg -3'
miRNA:   3'- -CGCCaCUu--CCUGGGGCau-------UUCGuCAG- -5'
26402 5' -53.4 NC_005345.2 + 30715 0.66 0.769405
Target:  5'- cGCGGUGAucggcgAGGACCUgcUGccGCAcGUCg -3'
miRNA:   3'- -CGCCACU------UCCUGGGgcAUuuCGU-CAG- -5'
26402 5' -53.4 NC_005345.2 + 7956 0.66 0.758988
Target:  5'- gGCGGgcGGGGAUCCCGU----CGGUCg -3'
miRNA:   3'- -CGCCacUUCCUGGGGCAuuucGUCAG- -5'
26402 5' -53.4 NC_005345.2 + 40255 0.66 0.758988
Target:  5'- aGCGGgGAcGGGGCgCCGgcGGGCAugaGUCc -3'
miRNA:   3'- -CGCCaCU-UCCUGgGGCauUUCGU---CAG- -5'
26402 5' -53.4 NC_005345.2 + 12703 0.67 0.736685
Target:  5'- gGCGGUGguGGGCgaugcagCCCGUGuucGCcGUCg -3'
miRNA:   3'- -CGCCACuuCCUG-------GGGCAUuu-CGuCAG- -5'
26402 5' -53.4 NC_005345.2 + 9470 0.67 0.726971
Target:  5'- cCGGUGAugcGGGGCUacucggcugagaCCGaguGGCAGUCg -3'
miRNA:   3'- cGCCACU---UCCUGG------------GGCauuUCGUCAG- -5'
26402 5' -53.4 NC_005345.2 + 47982 0.67 0.716085
Target:  5'- uGUGGUgGGAGGcGCagCCGgaccGAGCAGUCa -3'
miRNA:   3'- -CGCCA-CUUCC-UGg-GGCau--UUCGUCAG- -5'
26402 5' -53.4 NC_005345.2 + 3261 0.67 0.705112
Target:  5'- uCGGUGccGAGGuACCCCGUGc-GCAGc- -3'
miRNA:   3'- cGCCAC--UUCC-UGGGGCAUuuCGUCag -5'
26402 5' -53.4 NC_005345.2 + 754 0.67 0.705112
Target:  5'- cGCGGUGcucguGGGauaGCCCCGgccGGCGG-Cg -3'
miRNA:   3'- -CGCCACu----UCC---UGGGGCauuUCGUCaG- -5'
26402 5' -53.4 NC_005345.2 + 24645 0.67 0.694065
Target:  5'- cGCGGUGGucgaccAGGAUCCCGcGGgcccgggaccGGCcGUCg -3'
miRNA:   3'- -CGCCACU------UCCUGGGGCaUU----------UCGuCAG- -5'
26402 5' -53.4 NC_005345.2 + 45998 0.68 0.682955
Target:  5'- uGUGGUGgcGGGCCCuCGggGucGCuccGGUCg -3'
miRNA:   3'- -CGCCACuuCCUGGG-GCa-UuuCG---UCAG- -5'
26402 5' -53.4 NC_005345.2 + 36837 0.69 0.626874
Target:  5'- gGCGGUGcaggccGGACCCUGgc-GGCacaGGUCa -3'
miRNA:   3'- -CGCCACuu----CCUGGGGCauuUCG---UCAG- -5'
26402 5' -53.4 NC_005345.2 + 28134 0.69 0.626874
Target:  5'- gGCGGcGAGGGgguaugcgaaaGCCCCucgGGAGCGGUg -3'
miRNA:   3'- -CGCCaCUUCC-----------UGGGGca-UUUCGUCAg -5'
26402 5' -53.4 NC_005345.2 + 9091 0.69 0.6044
Target:  5'- aCGGUGAcGGuCCCCGcuguGUGGUCg -3'
miRNA:   3'- cGCCACUuCCuGGGGCauuuCGUCAG- -5'
26402 5' -53.4 NC_005345.2 + 5466 0.69 0.6044
Target:  5'- gGCGGUGccGAGuGACcgaCCCGaaauGGGCGGUCg -3'
miRNA:   3'- -CGCCAC--UUC-CUG---GGGCau--UUCGUCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.