miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26403 5' -64 NC_005345.2 + 5485 0.66 0.316132
Target:  5'- gCCaCcCGGCGGCGGCaGGcacGACgguGCGCa -3'
miRNA:   3'- aGGaGcGCCGCCGCCG-CCa--CUG---CGCG- -5'
26403 5' -64 NC_005345.2 + 41352 0.66 0.316132
Target:  5'- gCgUC-CGGCGGCGGCGca---GCGCu -3'
miRNA:   3'- aGgAGcGCCGCCGCCGCcacugCGCG- -5'
26403 5' -64 NC_005345.2 + 2031 0.66 0.316132
Target:  5'- gUCCUCGuCGaGCGGgccCGGCGcGgcccGGCGgGCc -3'
miRNA:   3'- -AGGAGC-GC-CGCC---GCCGC-Ca---CUGCgCG- -5'
26403 5' -64 NC_005345.2 + 6326 0.66 0.315399
Target:  5'- aUCCUCacgauGCaGCGGCaGGCGGcccaacuUGGC-CGCa -3'
miRNA:   3'- -AGGAG-----CGcCGCCG-CCGCC-------ACUGcGCG- -5'
26403 5' -64 NC_005345.2 + 36143 0.66 0.315399
Target:  5'- gUCCUCaGgGGCcGCcgacaucGGCGGguccGGCGUGCa -3'
miRNA:   3'- -AGGAG-CgCCGcCG-------CCGCCa---CUGCGCG- -5'
26403 5' -64 NC_005345.2 + 5659 0.66 0.311755
Target:  5'- aCCUUgGCGGCGaucgaggucaccuguGCGuCGGUGA-GCGCg -3'
miRNA:   3'- aGGAG-CGCCGC---------------CGCcGCCACUgCGCG- -5'
26403 5' -64 NC_005345.2 + 12700 0.66 0.308863
Target:  5'- ----aGUGGCGGUGGUGGgcGAUGCaGCc -3'
miRNA:   3'- aggagCGCCGCCGCCGCCa-CUGCG-CG- -5'
26403 5' -64 NC_005345.2 + 34396 0.66 0.308863
Target:  5'- cUCCgCGCugggcaaggugGGCGGCGccGCGGaccggaugggcGACGCGCu -3'
miRNA:   3'- -AGGaGCG-----------CCGCCGC--CGCCa----------CUGCGCG- -5'
26403 5' -64 NC_005345.2 + 45819 0.66 0.304563
Target:  5'- gUCgUCGCgaccgugacgugcacGGCGGCGGCGcG-GGCGaCGa -3'
miRNA:   3'- -AGgAGCG---------------CCGCCGCCGC-CaCUGC-GCg -5'
26403 5' -64 NC_005345.2 + 36316 0.66 0.301722
Target:  5'- gUCCUCGcCGGUGauGCGGCGcaGGCGaaccgGCg -3'
miRNA:   3'- -AGGAGC-GCCGC--CGCCGCcaCUGCg----CG- -5'
26403 5' -64 NC_005345.2 + 2888 0.66 0.301722
Target:  5'- ---aCGCGGCGGUGGCcucGACGaGCg -3'
miRNA:   3'- aggaGCGCCGCCGCCGccaCUGCgCG- -5'
26403 5' -64 NC_005345.2 + 34153 0.66 0.301722
Target:  5'- ---gCGCGGCGGCGGCcccgaGGaGugGCcCg -3'
miRNA:   3'- aggaGCGCCGCCGCCG-----CCaCugCGcG- -5'
26403 5' -64 NC_005345.2 + 5242 0.66 0.301722
Target:  5'- gCC-CGCGGUacacGGUGG-GcGUGACGgGCg -3'
miRNA:   3'- aGGaGCGCCG----CCGCCgC-CACUGCgCG- -5'
26403 5' -64 NC_005345.2 + 23252 0.66 0.301015
Target:  5'- gCCUCGCaGGCcgagaagGGgGGCGaGUGAUGgGa -3'
miRNA:   3'- aGGAGCG-CCG-------CCgCCGC-CACUGCgCg -5'
26403 5' -64 NC_005345.2 + 36468 0.66 0.299605
Target:  5'- gCCUCGgccuacaaccgaccCGGCGGguacgccaaCGGCGGccGAcCGCGCc -3'
miRNA:   3'- aGGAGC--------------GCCGCC---------GCCGCCa-CU-GCGCG- -5'
26403 5' -64 NC_005345.2 + 9298 0.66 0.29471
Target:  5'- aCCUCGCGGcCGGCguugaguucgucGGCGacccgGGCG-GCg -3'
miRNA:   3'- aGGAGCGCC-GCCG------------CCGCca---CUGCgCG- -5'
26403 5' -64 NC_005345.2 + 48887 0.66 0.287824
Target:  5'- gCCgaCGUGGCGGCGa-GGUG-CGgGCg -3'
miRNA:   3'- aGGa-GCGCCGCCGCcgCCACuGCgCG- -5'
26403 5' -64 NC_005345.2 + 415 0.66 0.287824
Target:  5'- gUCUCGCgaugcgagggGGCGGacguaguacgGGCGGguccGugGCGCa -3'
miRNA:   3'- aGGAGCG----------CCGCCg---------CCGCCa---CugCGCG- -5'
26403 5' -64 NC_005345.2 + 26767 0.66 0.287824
Target:  5'- gUCCccggCGCGG-GuGCGGCGGaucgUGGCcgGCGCc -3'
miRNA:   3'- -AGGa---GCGCCgC-CGCCGCC----ACUG--CGCG- -5'
26403 5' -64 NC_005345.2 + 3360 0.66 0.285784
Target:  5'- aCCUCGCGcagugguucuacgaGCugGGCGGCGaGguccGGCGCGg -3'
miRNA:   3'- aGGAGCGC--------------CG--CCGCCGC-Ca---CUGCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.