miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26403 5' -64 NC_005345.2 + 25105 0.66 0.281067
Target:  5'- gUUCgggcCGCGGCuGCaGGUgaaGGUGACGCGg -3'
miRNA:   3'- -AGGa---GCGCCGcCG-CCG---CCACUGCGCg -5'
26403 5' -64 NC_005345.2 + 45448 0.66 0.281067
Target:  5'- aCCUCGCcgccGGCGGCcgagacGGCGGccgggGugG-GCa -3'
miRNA:   3'- aGGAGCG----CCGCCG------CCGCCa----CugCgCG- -5'
26403 5' -64 NC_005345.2 + 1604 0.66 0.281067
Target:  5'- uUCCUUGCGGUcGCGuuCGGUGAUGaggucgguCGCg -3'
miRNA:   3'- -AGGAGCGCCGcCGCc-GCCACUGC--------GCG- -5'
26403 5' -64 NC_005345.2 + 3886 0.67 0.274435
Target:  5'- gCCUgcagCGCGGCGaG-GGCGGggcgGACGuCGUc -3'
miRNA:   3'- aGGA----GCGCCGC-CgCCGCCa---CUGC-GCG- -5'
26403 5' -64 NC_005345.2 + 31265 0.67 0.274435
Target:  5'- cUCgggugCGCGgguGCGGgGGCGGguGCGCGCc -3'
miRNA:   3'- aGGa----GCGC---CGCCgCCGCCacUGCGCG- -5'
26403 5' -64 NC_005345.2 + 37561 0.67 0.274435
Target:  5'- aCCUCGgcccgaGGCGGgcgcaGGCGGgcugcaGGCGgGCg -3'
miRNA:   3'- aGGAGCg-----CCGCCg----CCGCCa-----CUGCgCG- -5'
26403 5' -64 NC_005345.2 + 35314 0.67 0.274435
Target:  5'- gUCCUCGCgccgagcuuccgGGCGauCGGCGcGgccGGCGCGUg -3'
miRNA:   3'- -AGGAGCG------------CCGCc-GCCGC-Ca--CUGCGCG- -5'
26403 5' -64 NC_005345.2 + 638 0.67 0.26793
Target:  5'- gUCCUCgGCcuGCGGCGugaGCGG-GAcCGUGCg -3'
miRNA:   3'- -AGGAG-CGc-CGCCGC---CGCCaCU-GCGCG- -5'
26403 5' -64 NC_005345.2 + 23669 0.67 0.26793
Target:  5'- aCCagggUCGCGGcCGGUcgGGCGGgccgaGCGCa -3'
miRNA:   3'- aGG----AGCGCC-GCCG--CCGCCacug-CGCG- -5'
26403 5' -64 NC_005345.2 + 45379 0.67 0.26793
Target:  5'- aCgUC-CGGCGaGUGGgGGUGugccaagcccACGCGCg -3'
miRNA:   3'- aGgAGcGCCGC-CGCCgCCAC----------UGCGCG- -5'
26403 5' -64 NC_005345.2 + 37437 0.67 0.26793
Target:  5'- ---aCGCGGCGGCGGCccgcuGGUcGGC-CGUc -3'
miRNA:   3'- aggaGCGCCGCCGCCG-----CCA-CUGcGCG- -5'
26403 5' -64 NC_005345.2 + 7523 0.67 0.255293
Target:  5'- ---gUGCuGcCGGCGGCGGUcGugGUGCu -3'
miRNA:   3'- aggaGCGcC-GCCGCCGCCA-CugCGCG- -5'
26403 5' -64 NC_005345.2 + 21645 0.67 0.255293
Target:  5'- aUCCUCaGCGGCucgggcggGGUGGgGGUGACu--- -3'
miRNA:   3'- -AGGAG-CGCCG--------CCGCCgCCACUGcgcg -5'
26403 5' -64 NC_005345.2 + 40246 0.67 0.255293
Target:  5'- aUCCUgGCGaGCGG-GGaCGG-GGCGCcgGCg -3'
miRNA:   3'- -AGGAgCGC-CGCCgCC-GCCaCUGCG--CG- -5'
26403 5' -64 NC_005345.2 + 10281 0.67 0.254674
Target:  5'- -aCUCGCGGcCGGCGacaccggacccgaGCGGgaaGCGgGCa -3'
miRNA:   3'- agGAGCGCC-GCCGC-------------CGCCac-UGCgCG- -5'
26403 5' -64 NC_005345.2 + 4143 0.67 0.24916
Target:  5'- -gCUCGCGGCGcucguCGaGCGGgugucGACGCGg -3'
miRNA:   3'- agGAGCGCCGCc----GC-CGCCa----CUGCGCg -5'
26403 5' -64 NC_005345.2 + 38058 0.67 0.24315
Target:  5'- --aUCGCGGUGGCGG-GGau-UGCGCc -3'
miRNA:   3'- aggAGCGCCGCCGCCgCCacuGCGCG- -5'
26403 5' -64 NC_005345.2 + 2729 0.67 0.24315
Target:  5'- aCUggaCGCGGCGaGaCGGCGGUcGACaaGUGCc -3'
miRNA:   3'- aGGa--GCGCCGC-C-GCCGCCA-CUG--CGCG- -5'
26403 5' -64 NC_005345.2 + 35095 0.67 0.24315
Target:  5'- gUUCUCgGCGGUGGUGcGgGcGUGGCGgGUg -3'
miRNA:   3'- -AGGAG-CGCCGCCGC-CgC-CACUGCgCG- -5'
26403 5' -64 NC_005345.2 + 33521 0.67 0.23726
Target:  5'- gUCCggGCaGGCGGCGagccGCGGcaugcUGACGaCGCu -3'
miRNA:   3'- -AGGagCG-CCGCCGC----CGCC-----ACUGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.