Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26404 | 3' | -54.8 | NC_005345.2 | + | 21263 | 0.7 | 0.504673 |
Target: 5'- --cGUCGUCCGUGUcgUCGCcGUCGUCc -3' miRNA: 3'- ggaCAGCGGGCACA--AGUGuCGGUAGc -5' |
|||||||
26404 | 3' | -54.8 | NC_005345.2 | + | 5680 | 0.71 | 0.424578 |
Target: 5'- aCCUGUgCGUCgGUGagCGCGGUCGUCu -3' miRNA: 3'- -GGACA-GCGGgCACaaGUGUCGGUAGc -5' |
|||||||
26404 | 3' | -54.8 | NC_005345.2 | + | 4618 | 0.75 | 0.261641 |
Target: 5'- uCCcGUUGCCCGgGUUCGCucgauauccgGGCCGUCGc -3' miRNA: 3'- -GGaCAGCGGGCaCAAGUG----------UCGGUAGC- -5' |
|||||||
26404 | 3' | -54.8 | NC_005345.2 | + | 21223 | 0.76 | 0.235879 |
Target: 5'- -gUGUCGUCCGUG-UCGgAGUCGUCGg -3' miRNA: 3'- ggACAGCGGGCACaAGUgUCGGUAGC- -5' |
|||||||
26404 | 3' | -54.8 | NC_005345.2 | + | 35045 | 0.82 | 0.087324 |
Target: 5'- uCCUGUCGCCgGUGUUCuCGGCgAUCu -3' miRNA: 3'- -GGACAGCGGgCACAAGuGUCGgUAGc -5' |
|||||||
26404 | 3' | -54.8 | NC_005345.2 | + | 35450 | 1.11 | 0.000752 |
Target: 5'- uCCUGUCGCCCGUGUUCACAGCCAUCGg -3' miRNA: 3'- -GGACAGCGGGCACAAGUGUCGGUAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home