miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26405 3' -59.8 NC_005345.2 + 4348 0.66 0.45392
Target:  5'- gCCGGGGucc-UGcCUCgGGCGGGCgGGc -3'
miRNA:   3'- -GGCCCCuucuAC-GAG-CCGCCCGaCUu -5'
26405 3' -59.8 NC_005345.2 + 21634 0.66 0.434702
Target:  5'- gCGGGaGAucgauccucAGcgGCUCgGGCGGGgUGGGg -3'
miRNA:   3'- gGCCC-CU---------UCuaCGAG-CCGCCCgACUU- -5'
26405 3' -59.8 NC_005345.2 + 36344 0.66 0.434702
Target:  5'- aCCGGcGGGccgAGcgGCUCgGGCGGGUc--- -3'
miRNA:   3'- -GGCC-CCU---UCuaCGAG-CCGCCCGacuu -5'
26405 3' -59.8 NC_005345.2 + 10874 0.66 0.425272
Target:  5'- aCGGGccac-UGCaaGGCGGGCUGAGu -3'
miRNA:   3'- gGCCCcuucuACGagCCGCCCGACUU- -5'
26405 3' -59.8 NC_005345.2 + 31815 0.67 0.376537
Target:  5'- gUCGGGGuccgGGAUGCgugcgugcacccgCGGCGGGUg--- -3'
miRNA:   3'- -GGCCCCu---UCUACGa------------GCCGCCCGacuu -5'
26405 3' -59.8 NC_005345.2 + 1636 0.67 0.37136
Target:  5'- cCCGGGGGAGGgugGCa-GGCaGGgUGAc -3'
miRNA:   3'- -GGCCCCUUCUa--CGagCCGcCCgACUu -5'
26405 3' -59.8 NC_005345.2 + 3437 0.67 0.362839
Target:  5'- gCGGGcGgcGAUgcgggccccgaGCUCGcGCGGGCUGu- -3'
miRNA:   3'- gGCCC-CuuCUA-----------CGAGC-CGCCCGACuu -5'
26405 3' -59.8 NC_005345.2 + 37286 0.67 0.354454
Target:  5'- gCGGGGAAGggGUUCcuuacCGGGCUGc- -3'
miRNA:   3'- gGCCCCUUCuaCGAGcc---GCCCGACuu -5'
26405 3' -59.8 NC_005345.2 + 31899 0.68 0.332505
Target:  5'- uUCGGGGAucggcgggugcauGGGUgcgaggucgaguaaaGCUCGGCGGGUgcgGGu -3'
miRNA:   3'- -GGCCCCU-------------UCUA---------------CGAGCCGCCCGa--CUu -5'
26405 3' -59.8 NC_005345.2 + 4232 0.68 0.314608
Target:  5'- -gGGGGGcgGGGUGCUcaCGGCucGGGCUGc- -3'
miRNA:   3'- ggCCCCU--UCUACGA--GCCG--CCCGACuu -5'
26405 3' -59.8 NC_005345.2 + 31464 0.71 0.204703
Target:  5'- gCCGGGGugcGGGUGUgaGGCGGGC-GAGc -3'
miRNA:   3'- -GGCCCCu--UCUACGagCCGCCCGaCUU- -5'
26405 3' -59.8 NC_005345.2 + 35934 0.72 0.184212
Target:  5'- gCCGGGGcgcGGGGugUGCUCGccgcGCGGGCUGc- -3'
miRNA:   3'- -GGCCCC---UUCU--ACGAGC----CGCCCGACuu -5'
26405 3' -59.8 NC_005345.2 + 40256 0.74 0.12272
Target:  5'- gCGGGGAcgGGgcGC-CGGCGGGCaUGAGu -3'
miRNA:   3'- gGCCCCU--UCuaCGaGCCGCCCG-ACUU- -5'
26405 3' -59.8 NC_005345.2 + 36077 1.08 0.000374
Target:  5'- cCCGGGGAAGAUGCUCGGCGGGCUGAAa -3'
miRNA:   3'- -GGCCCCUUCUACGAGCCGCCCGACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.