miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26405 5' -56.5 NC_005345.2 + 19047 0.66 0.638487
Target:  5'- gCCUCGcCGCccuGGCCGuGGUCGC-CUa- -3'
miRNA:   3'- aGGAGCuGCG---CCGGU-UCAGCGaGAag -5'
26405 5' -56.5 NC_005345.2 + 17870 0.66 0.637385
Target:  5'- aUCCUCGGgguccgcCGUGGCguAGUCGCcgaUCa -3'
miRNA:   3'- -AGGAGCU-------GCGCCGguUCAGCGagaAG- -5'
26405 5' -56.5 NC_005345.2 + 18417 0.66 0.627468
Target:  5'- aCCUCGACgacguGCGGCagCAGGUC-CUCg-- -3'
miRNA:   3'- aGGAGCUG-----CGCCG--GUUCAGcGAGaag -5'
26405 5' -56.5 NC_005345.2 + 3654 0.66 0.627468
Target:  5'- cCCggCGGCaGCGGCCGGGaUCGUg--UCg -3'
miRNA:   3'- aGGa-GCUG-CGCCGGUUC-AGCGagaAG- -5'
26405 5' -56.5 NC_005345.2 + 5406 0.66 0.627468
Target:  5'- gCC-CGGCGguCGGCCGAGcgucUCGCcgaguUCUUCg -3'
miRNA:   3'- aGGaGCUGC--GCCGGUUC----AGCG-----AGAAG- -5'
26405 5' -56.5 NC_005345.2 + 13676 0.66 0.616453
Target:  5'- cCCUCGACGCcGUCGGG-CaGCUCg-- -3'
miRNA:   3'- aGGAGCUGCGcCGGUUCaG-CGAGaag -5'
26405 5' -56.5 NC_005345.2 + 29378 0.66 0.616453
Target:  5'- gUCaCUCGGuCGUGGCCGcGGU-GCUCUggUCg -3'
miRNA:   3'- -AG-GAGCU-GCGCCGGU-UCAgCGAGA--AG- -5'
26405 5' -56.5 NC_005345.2 + 36429 0.66 0.613151
Target:  5'- gCCUCGAUGCGGUaCGcgcugucccgcuacGGcUCGCUCgccUCg -3'
miRNA:   3'- aGGAGCUGCGCCG-GU--------------UC-AGCGAGa--AG- -5'
26405 5' -56.5 NC_005345.2 + 38121 0.66 0.594474
Target:  5'- aCCcCGGCuGCGGCCGgGGUCGUcaccuaCUUCg -3'
miRNA:   3'- aGGaGCUG-CGCCGGU-UCAGCGa-----GAAG- -5'
26405 5' -56.5 NC_005345.2 + 32985 0.66 0.583528
Target:  5'- gUCCUCGGCGCaggcGGCCgGGGUgGCgggggCgUCg -3'
miRNA:   3'- -AGGAGCUGCG----CCGG-UUCAgCGa----GaAG- -5'
26405 5' -56.5 NC_005345.2 + 30812 0.67 0.572622
Target:  5'- aCCUCGACcCgGGCCGAcGUCGCg---- -3'
miRNA:   3'- aGGAGCUGcG-CCGGUU-CAGCGagaag -5'
26405 5' -56.5 NC_005345.2 + 22281 0.67 0.572622
Target:  5'- aUCgUCGAgGCGGCCGGGgcgaCGUgggUCg -3'
miRNA:   3'- -AGgAGCUgCGCCGGUUCa---GCGagaAG- -5'
26405 5' -56.5 NC_005345.2 + 32733 0.67 0.572622
Target:  5'- cCCUCGGCGUgGGCCcgcUUGCUCa-- -3'
miRNA:   3'- aGGAGCUGCG-CCGGuucAGCGAGaag -5'
26405 5' -56.5 NC_005345.2 + 10069 0.67 0.561766
Target:  5'- -gUUCGACGCcGUCGAGgCGCUCgUCa -3'
miRNA:   3'- agGAGCUGCGcCGGUUCaGCGAGaAG- -5'
26405 5' -56.5 NC_005345.2 + 32664 0.67 0.561766
Target:  5'- aCCUCGACGCcgucgaGGCCGAGgUCGaC-CUg- -3'
miRNA:   3'- aGGAGCUGCG------CCGGUUC-AGC-GaGAag -5'
26405 5' -56.5 NC_005345.2 + 424 0.67 0.561766
Target:  5'- -aCUCcAUGCGGCCGGuGUCccgGUUCUUCa -3'
miRNA:   3'- agGAGcUGCGCCGGUU-CAG---CGAGAAG- -5'
26405 5' -56.5 NC_005345.2 + 6780 0.67 0.561766
Target:  5'- aCCUCGGCgugugGCGGCUgGAGUCGCa---- -3'
miRNA:   3'- aGGAGCUG-----CGCCGG-UUCAGCGagaag -5'
26405 5' -56.5 NC_005345.2 + 31602 0.67 0.54023
Target:  5'- -gCUCGGCGCGGCCcgcGGaUCGCa---- -3'
miRNA:   3'- agGAGCUGCGCCGGu--UC-AGCGagaag -5'
26405 5' -56.5 NC_005345.2 + 43495 0.67 0.54023
Target:  5'- aCCUCGAuCGCcGCCAAgGUCGCg---- -3'
miRNA:   3'- aGGAGCU-GCGcCGGUU-CAGCGagaag -5'
26405 5' -56.5 NC_005345.2 + 12871 0.67 0.54023
Target:  5'- gUUgUUGAuCGCGGCCGGGUugccgcCGCUCUc- -3'
miRNA:   3'- -AGgAGCU-GCGCCGGUUCA------GCGAGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.