miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26405 5' -56.5 NC_005345.2 + 36111 1.1 0.000505
Target:  5'- gUCCUCGACGCGGCCAAGUCGCUCUUCg -3'
miRNA:   3'- -AGGAGCUGCGCCGGUUCAGCGAGAAG- -5'
26405 5' -56.5 NC_005345.2 + 28173 0.78 0.11424
Target:  5'- uUCCUCGcCGCGGCCAAGgggCgGCUCg-- -3'
miRNA:   3'- -AGGAGCuGCGCCGGUUCa--G-CGAGaag -5'
26405 5' -56.5 NC_005345.2 + 41032 0.76 0.159518
Target:  5'- gUCgaCGACgGCGGCCGGGUCGgUCUUg -3'
miRNA:   3'- -AGgaGCUG-CGCCGGUUCAGCgAGAAg -5'
26405 5' -56.5 NC_005345.2 + 39348 0.73 0.264364
Target:  5'- cCCUCGGCGUGGCCGug-CGCUa--- -3'
miRNA:   3'- aGGAGCUGCGCCGGUucaGCGAgaag -5'
26405 5' -56.5 NC_005345.2 + 14869 0.72 0.285296
Target:  5'- -gCUCGACGCGGCCGAGgCGag--UCg -3'
miRNA:   3'- agGAGCUGCGCCGGUUCaGCgagaAG- -5'
26405 5' -56.5 NC_005345.2 + 2046 0.72 0.286016
Target:  5'- gCC-CGGCGCGGCCcggcGGgccgcggcgaaaaugCGCUCUUCg -3'
miRNA:   3'- aGGaGCUGCGCCGGu---UCa--------------GCGAGAAG- -5'
26405 5' -56.5 NC_005345.2 + 6678 0.7 0.381939
Target:  5'- cUCCUCGACGaCGGCCucggcGUCGauaUCg-- -3'
miRNA:   3'- -AGGAGCUGC-GCCGGuu---CAGCg--AGaag -5'
26405 5' -56.5 NC_005345.2 + 43984 0.7 0.381939
Target:  5'- cCUUCGAgGgCGGCgaCGAGUCGCUCg-- -3'
miRNA:   3'- aGGAGCUgC-GCCG--GUUCAGCGAGaag -5'
26405 5' -56.5 NC_005345.2 + 38929 0.69 0.428167
Target:  5'- aCCUCGACGgGGUCGuGcUUGCcgaUCUUCg -3'
miRNA:   3'- aGGAGCUGCgCCGGUuC-AGCG---AGAAG- -5'
26405 5' -56.5 NC_005345.2 + 36736 0.69 0.437803
Target:  5'- gCCUCGACGUcaucGGCCGAcUCGCgCcUCg -3'
miRNA:   3'- aGGAGCUGCG----CCGGUUcAGCGaGaAG- -5'
26405 5' -56.5 NC_005345.2 + 638 0.69 0.446581
Target:  5'- gUCCUCGGCcugcggcgugaGCGGgaccgugcggaacCCGGcGUUGCUCUUCg -3'
miRNA:   3'- -AGGAGCUG-----------CGCC-------------GGUU-CAGCGAGAAG- -5'
26405 5' -56.5 NC_005345.2 + 4359 0.68 0.487754
Target:  5'- gCCUCGG-GCGGgCGGGcCGCUCg-- -3'
miRNA:   3'- aGGAGCUgCGCCgGUUCaGCGAGaag -5'
26405 5' -56.5 NC_005345.2 + 37353 0.68 0.497032
Target:  5'- gCCgCGGCGUGcCCGAGcagcuuugcggccUCGCUCUUCu -3'
miRNA:   3'- aGGaGCUGCGCcGGUUC-------------AGCGAGAAG- -5'
26405 5' -56.5 NC_005345.2 + 4165 0.68 0.508479
Target:  5'- gUgUCGACGCGG-CAGG-CGCUCa-- -3'
miRNA:   3'- aGgAGCUGCGCCgGUUCaGCGAGaag -5'
26405 5' -56.5 NC_005345.2 + 21036 0.68 0.508479
Target:  5'- uUCCUCGgcACGCGcGCCGGcgaccgccucGUCGaUCUUCu -3'
miRNA:   3'- -AGGAGC--UGCGC-CGGUU----------CAGCgAGAAG- -5'
26405 5' -56.5 NC_005345.2 + 19704 0.68 0.508479
Target:  5'- gUCCUCGuACGUGGCgacccacgauuCGAGaUCGCUgaUCg -3'
miRNA:   3'- -AGGAGC-UGCGCCG-----------GUUC-AGCGAgaAG- -5'
26405 5' -56.5 NC_005345.2 + 41520 0.67 0.51898
Target:  5'- gCCUCGAUGUucugGGCCGGGUCggcgauguGCUCc-- -3'
miRNA:   3'- aGGAGCUGCG----CCGGUUCAG--------CGAGaag -5'
26405 5' -56.5 NC_005345.2 + 12871 0.67 0.54023
Target:  5'- gUUgUUGAuCGCGGCCGGGUugccgcCGCUCUc- -3'
miRNA:   3'- -AGgAGCU-GCGCCGGUUCA------GCGAGAag -5'
26405 5' -56.5 NC_005345.2 + 43495 0.67 0.54023
Target:  5'- aCCUCGAuCGCcGCCAAgGUCGCg---- -3'
miRNA:   3'- aGGAGCU-GCGcCGGUU-CAGCGagaag -5'
26405 5' -56.5 NC_005345.2 + 31602 0.67 0.54023
Target:  5'- -gCUCGGCGCGGCCcgcGGaUCGCa---- -3'
miRNA:   3'- agGAGCUGCGCCGGu--UC-AGCGagaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.