miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26405 5' -56.5 NC_005345.2 + 424 0.67 0.561766
Target:  5'- -aCUCcAUGCGGCCGGuGUCccgGUUCUUCa -3'
miRNA:   3'- agGAGcUGCGCCGGUU-CAG---CGAGAAG- -5'
26405 5' -56.5 NC_005345.2 + 638 0.69 0.446581
Target:  5'- gUCCUCGGCcugcggcgugaGCGGgaccgugcggaacCCGGcGUUGCUCUUCg -3'
miRNA:   3'- -AGGAGCUG-----------CGCC-------------GGUU-CAGCGAGAAG- -5'
26405 5' -56.5 NC_005345.2 + 2046 0.72 0.286016
Target:  5'- gCC-CGGCGCGGCCcggcGGgccgcggcgaaaaugCGCUCUUCg -3'
miRNA:   3'- aGGaGCUGCGCCGGu---UCa--------------GCGAGAAG- -5'
26405 5' -56.5 NC_005345.2 + 3654 0.66 0.627468
Target:  5'- cCCggCGGCaGCGGCCGGGaUCGUg--UCg -3'
miRNA:   3'- aGGa-GCUG-CGCCGGUUC-AGCGagaAG- -5'
26405 5' -56.5 NC_005345.2 + 4165 0.68 0.508479
Target:  5'- gUgUCGACGCGG-CAGG-CGCUCa-- -3'
miRNA:   3'- aGgAGCUGCGCCgGUUCaGCGAGaag -5'
26405 5' -56.5 NC_005345.2 + 4359 0.68 0.487754
Target:  5'- gCCUCGG-GCGGgCGGGcCGCUCg-- -3'
miRNA:   3'- aGGAGCUgCGCCgGUUCaGCGAGaag -5'
26405 5' -56.5 NC_005345.2 + 5406 0.66 0.627468
Target:  5'- gCC-CGGCGguCGGCCGAGcgucUCGCcgaguUCUUCg -3'
miRNA:   3'- aGGaGCUGC--GCCGGUUC----AGCG-----AGAAG- -5'
26405 5' -56.5 NC_005345.2 + 6678 0.7 0.381939
Target:  5'- cUCCUCGACGaCGGCCucggcGUCGauaUCg-- -3'
miRNA:   3'- -AGGAGCUGC-GCCGGuu---CAGCg--AGaag -5'
26405 5' -56.5 NC_005345.2 + 6780 0.67 0.561766
Target:  5'- aCCUCGGCgugugGCGGCUgGAGUCGCa---- -3'
miRNA:   3'- aGGAGCUG-----CGCCGG-UUCAGCGagaag -5'
26405 5' -56.5 NC_005345.2 + 10069 0.67 0.561766
Target:  5'- -gUUCGACGCcGUCGAGgCGCUCgUCa -3'
miRNA:   3'- agGAGCUGCGcCGGUUCaGCGAGaAG- -5'
26405 5' -56.5 NC_005345.2 + 12871 0.67 0.54023
Target:  5'- gUUgUUGAuCGCGGCCGGGUugccgcCGCUCUc- -3'
miRNA:   3'- -AGgAGCU-GCGCCGGUUCA------GCGAGAag -5'
26405 5' -56.5 NC_005345.2 + 13676 0.66 0.616453
Target:  5'- cCCUCGACGCcGUCGGG-CaGCUCg-- -3'
miRNA:   3'- aGGAGCUGCGcCGGUUCaG-CGAGaag -5'
26405 5' -56.5 NC_005345.2 + 14869 0.72 0.285296
Target:  5'- -gCUCGACGCGGCCGAGgCGag--UCg -3'
miRNA:   3'- agGAGCUGCGCCGGUUCaGCgagaAG- -5'
26405 5' -56.5 NC_005345.2 + 17870 0.66 0.637385
Target:  5'- aUCCUCGGgguccgcCGUGGCguAGUCGCcgaUCa -3'
miRNA:   3'- -AGGAGCU-------GCGCCGguUCAGCGagaAG- -5'
26405 5' -56.5 NC_005345.2 + 18417 0.66 0.627468
Target:  5'- aCCUCGACgacguGCGGCagCAGGUC-CUCg-- -3'
miRNA:   3'- aGGAGCUG-----CGCCG--GUUCAGcGAGaag -5'
26405 5' -56.5 NC_005345.2 + 19047 0.66 0.638487
Target:  5'- gCCUCGcCGCccuGGCCGuGGUCGC-CUa- -3'
miRNA:   3'- aGGAGCuGCG---CCGGU-UCAGCGaGAag -5'
26405 5' -56.5 NC_005345.2 + 19704 0.68 0.508479
Target:  5'- gUCCUCGuACGUGGCgacccacgauuCGAGaUCGCUgaUCg -3'
miRNA:   3'- -AGGAGC-UGCGCCG-----------GUUC-AGCGAgaAG- -5'
26405 5' -56.5 NC_005345.2 + 21036 0.68 0.508479
Target:  5'- uUCCUCGgcACGCGcGCCGGcgaccgccucGUCGaUCUUCu -3'
miRNA:   3'- -AGGAGC--UGCGC-CGGUU----------CAGCgAGAAG- -5'
26405 5' -56.5 NC_005345.2 + 22281 0.67 0.572622
Target:  5'- aUCgUCGAgGCGGCCGGGgcgaCGUgggUCg -3'
miRNA:   3'- -AGgAGCUgCGCCGGUUCa---GCGagaAG- -5'
26405 5' -56.5 NC_005345.2 + 28173 0.78 0.11424
Target:  5'- uUCCUCGcCGCGGCCAAGgggCgGCUCg-- -3'
miRNA:   3'- -AGGAGCuGCGCCGGUUCa--G-CGAGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.