miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26406 3' -59.7 NC_005345.2 + 42731 0.66 0.434138
Target:  5'- cACucGCCGACCgaCGGCGGGccCGCgAAa -3'
miRNA:   3'- aUGu-UGGCUGG--GCCGCCCauGCGgUU- -5'
26406 3' -59.7 NC_005345.2 + 24082 0.66 0.434138
Target:  5'- -uCGGCCGGCCguggcacuCGGUGcGUACGCCGc -3'
miRNA:   3'- auGUUGGCUGG--------GCCGCcCAUGCGGUu -5'
26406 3' -59.7 NC_005345.2 + 17350 0.66 0.434138
Target:  5'- gACc-CCGACCCGGaCGGcgaacccgaGUGCGUCGAc -3'
miRNA:   3'- aUGuuGGCUGGGCC-GCC---------CAUGCGGUU- -5'
26406 3' -59.7 NC_005345.2 + 4284 0.66 0.434138
Target:  5'- cGCGACgCGGCCgCcGCGGG-GCGCCu- -3'
miRNA:   3'- aUGUUG-GCUGG-GcCGCCCaUGCGGuu -5'
26406 3' -59.7 NC_005345.2 + 17850 0.66 0.428426
Target:  5'- cGCAGCagcGCCCGGCGGGaauccucggggucCGCCGu -3'
miRNA:   3'- aUGUUGgc-UGGGCCGCCCau-----------GCGGUu -5'
26406 3' -59.7 NC_005345.2 + 29988 0.66 0.428426
Target:  5'- gGCAGCCGuacggGCCCGGCgacgacgucccggccGaGGU-CGCCGAg -3'
miRNA:   3'- aUGUUGGC-----UGGGCCG---------------C-CCAuGCGGUU- -5'
26406 3' -59.7 NC_005345.2 + 33910 0.66 0.424643
Target:  5'- gGCAGCUGAUCCGuaCGGGcAUGUCAAg -3'
miRNA:   3'- aUGUUGGCUGGGCc-GCCCaUGCGGUU- -5'
26406 3' -59.7 NC_005345.2 + 43967 0.66 0.424643
Target:  5'- aUGCGugCaGCCCGGCGGcu-CGCCc- -3'
miRNA:   3'- -AUGUugGcUGGGCCGCCcauGCGGuu -5'
26406 3' -59.7 NC_005345.2 + 42751 0.66 0.424643
Target:  5'- --gGACCGgcACCCGGCGGu--UGCCGGg -3'
miRNA:   3'- augUUGGC--UGGGCCGCCcauGCGGUU- -5'
26406 3' -59.7 NC_005345.2 + 37727 0.66 0.424643
Target:  5'- cUGCGGCgCGGCgCCGGCuGGUcgGCGUCGu -3'
miRNA:   3'- -AUGUUG-GCUG-GGCCGcCCA--UGCGGUu -5'
26406 3' -59.7 NC_005345.2 + 31225 0.66 0.415273
Target:  5'- gUGCGGCCGGguguacggcgggUCCGGgguCGGGUGCGCa-- -3'
miRNA:   3'- -AUGUUGGCU------------GGGCC---GCCCAUGCGguu -5'
26406 3' -59.7 NC_005345.2 + 32889 0.66 0.415273
Target:  5'- --aGACCGGCCCgcaGGCuGGGgGCGCUg- -3'
miRNA:   3'- augUUGGCUGGG---CCG-CCCaUGCGGuu -5'
26406 3' -59.7 NC_005345.2 + 29729 0.66 0.415273
Target:  5'- gUGCGACCGACgCGGCGca---GCCGAc -3'
miRNA:   3'- -AUGUUGGCUGgGCCGCccaugCGGUU- -5'
26406 3' -59.7 NC_005345.2 + 41823 0.66 0.406031
Target:  5'- cGCGugCGACUCGGCGuc--CGCCGAc -3'
miRNA:   3'- aUGUugGCUGGGCCGCccauGCGGUU- -5'
26406 3' -59.7 NC_005345.2 + 32524 0.66 0.406031
Target:  5'- gGCGGcCCGAUCUGcGCGGGUccGgGCCGc -3'
miRNA:   3'- aUGUU-GGCUGGGC-CGCCCA--UgCGGUu -5'
26406 3' -59.7 NC_005345.2 + 39560 0.67 0.38794
Target:  5'- cGCGGCCGGuCCCGGCcGGucGUGCGUUc- -3'
miRNA:   3'- aUGUUGGCU-GGGCCG-CC--CAUGCGGuu -5'
26406 3' -59.7 NC_005345.2 + 24627 0.67 0.379095
Target:  5'- cUGCAcgauccGCCGugCgGGcCGGGUugguCGCCGAu -3'
miRNA:   3'- -AUGU------UGGCugGgCC-GCCCAu---GCGGUU- -5'
26406 3' -59.7 NC_005345.2 + 26295 0.67 0.379095
Target:  5'- aGCGcACCGACCCGGCgaccGGG-AUGaCCGu -3'
miRNA:   3'- aUGU-UGGCUGGGCCG----CCCaUGC-GGUu -5'
26406 3' -59.7 NC_005345.2 + 16876 0.67 0.379095
Target:  5'- gUACGGCCGAgCgUGGCGGcGgaagGCGCCc- -3'
miRNA:   3'- -AUGUUGGCU-GgGCCGCC-Ca---UGCGGuu -5'
26406 3' -59.7 NC_005345.2 + 6250 0.67 0.379095
Target:  5'- aGCGACU-ACCCGGCGGuucuuccuccGUggGCGCCGGg -3'
miRNA:   3'- aUGUUGGcUGGGCCGCC----------CA--UGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.