miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26407 3' -62.9 NC_005345.2 + 42420 0.66 0.322195
Target:  5'- aUGCGGGacgugGGCuugcacaccgugcccGCCGGcuGCUCGUGCCa -3'
miRNA:   3'- -ACGUCUa----CCGc--------------CGGCC--CGAGCACGGc -5'
26407 3' -62.9 NC_005345.2 + 31273 0.66 0.321436
Target:  5'- cGCGGGUGcGgGGgCGGGUgCGcGCCa -3'
miRNA:   3'- aCGUCUAC-CgCCgGCCCGaGCaCGGc -5'
26407 3' -62.9 NC_005345.2 + 5442 0.66 0.321436
Target:  5'- gGCGGcgcccgGGuCGGCCguagGGGCg-GUGCCGa -3'
miRNA:   3'- aCGUCua----CC-GCCGG----CCCGagCACGGC- -5'
26407 3' -62.9 NC_005345.2 + 24449 0.66 0.320678
Target:  5'- cGCGGAgaacucGGCGGCCGacuaucaGGCgaucaUCGacgGCCGg -3'
miRNA:   3'- aCGUCUa-----CCGCCGGC-------CCG-----AGCa--CGGC- -5'
26407 3' -62.9 NC_005345.2 + 14936 0.66 0.313916
Target:  5'- cUGCAGcgGGCGGCgGcgaaGGaUCGcGCCGc -3'
miRNA:   3'- -ACGUCuaCCGCCGgC----CCgAGCaCGGC- -5'
26407 3' -62.9 NC_005345.2 + 10609 0.66 0.313916
Target:  5'- aGCAGcgGcGCGGCCGgucGGCcCGgGUCGa -3'
miRNA:   3'- aCGUCuaC-CGCCGGC---CCGaGCaCGGC- -5'
26407 3' -62.9 NC_005345.2 + 28098 0.66 0.313916
Target:  5'- --aAGAUcgacgaGGCGGUCGccGGCgcgCGUGCCGa -3'
miRNA:   3'- acgUCUA------CCGCCGGC--CCGa--GCACGGC- -5'
26407 3' -62.9 NC_005345.2 + 43484 0.66 0.309468
Target:  5'- cGCGGucggcucgguccgGGCccGCCGGGCg-GUGCCGa -3'
miRNA:   3'- aCGUCua-----------CCGc-CGGCCCGagCACGGC- -5'
26407 3' -62.9 NC_005345.2 + 26784 0.66 0.30653
Target:  5'- gGCGGAUcGUGGCCGGcGC-CGcGUCGc -3'
miRNA:   3'- aCGUCUAcCGCCGGCC-CGaGCaCGGC- -5'
26407 3' -62.9 NC_005345.2 + 12872 0.66 0.30653
Target:  5'- uUGUuGAUcGCGGCCGGGU---UGCCGc -3'
miRNA:   3'- -ACGuCUAcCGCCGGCCCGagcACGGC- -5'
26407 3' -62.9 NC_005345.2 + 14654 0.66 0.30653
Target:  5'- cGCGuccucGGCaccGGCCGGGCggCGUcGCCGa -3'
miRNA:   3'- aCGUcua--CCG---CCGGCCCGa-GCA-CGGC- -5'
26407 3' -62.9 NC_005345.2 + 35286 0.66 0.291454
Target:  5'- aGCAGGcgcaacguggcugUGGaCGGCCGucCUCGcGCCGa -3'
miRNA:   3'- aCGUCU-------------ACC-GCCGGCccGAGCaCGGC- -5'
26407 3' -62.9 NC_005345.2 + 29295 0.66 0.287952
Target:  5'- gGguGAUccggGGCGGCCGGGaugccuggaagcugUCG-GCCGc -3'
miRNA:   3'- aCguCUA----CCGCCGGCCCg-------------AGCaCGGC- -5'
26407 3' -62.9 NC_005345.2 + 30123 0.67 0.27832
Target:  5'- gGCGGAgcaGCGGCCcgaGGGCggCGcGCCa -3'
miRNA:   3'- aCGUCUac-CGCCGG---CCCGa-GCaCGGc -5'
26407 3' -62.9 NC_005345.2 + 17505 0.67 0.27832
Target:  5'- cUGCGGGccgccGGUcgccGGCCGGGCgaggacCGUGUCGc -3'
miRNA:   3'- -ACGUCUa----CCG----CCGGCCCGa-----GCACGGC- -5'
26407 3' -62.9 NC_005345.2 + 35767 0.67 0.265009
Target:  5'- gGCGGGgcggGGCGG-UGGGUUCGgugGCuCGg -3'
miRNA:   3'- aCGUCUa---CCGCCgGCCCGAGCa--CG-GC- -5'
26407 3' -62.9 NC_005345.2 + 45462 0.67 0.265009
Target:  5'- gGCcgAGAcGGCGGCCGGGgUgGgcaUGUCGg -3'
miRNA:   3'- aCG--UCUaCCGCCGGCCCgAgC---ACGGC- -5'
26407 3' -62.9 NC_005345.2 + 27564 0.67 0.265009
Target:  5'- cGuCGGAccccGGCGGCCGGGC----GCCGg -3'
miRNA:   3'- aC-GUCUa---CCGCCGGCCCGagcaCGGC- -5'
26407 3' -62.9 NC_005345.2 + 39209 0.67 0.265009
Target:  5'- cGCGGGuUGGCGaccGUCGGGC-CGacGCCGa -3'
miRNA:   3'- aCGUCU-ACCGC---CGGCCCGaGCa-CGGC- -5'
26407 3' -62.9 NC_005345.2 + 37032 0.67 0.265009
Target:  5'- aGCGGcaccgGGCGaGCCGGGaucCG-GCCGg -3'
miRNA:   3'- aCGUCua---CCGC-CGGCCCga-GCaCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.