miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26407 5' -54.6 NC_005345.2 + 44463 0.66 0.693625
Target:  5'- gUUCGCCGcacGGGCGUCGAGCCgagcagCGAa- -3'
miRNA:   3'- -AAGCGGUu--CCCGUGGUUUGGa-----GCUag -5'
26407 5' -54.6 NC_005345.2 + 42024 0.66 0.693625
Target:  5'- cUUCGCCGGGGgauacgucccccGCACCGgcAGCC-CGAg- -3'
miRNA:   3'- -AAGCGGUUCC------------CGUGGU--UUGGaGCUag -5'
26407 5' -54.6 NC_005345.2 + 4795 0.66 0.682416
Target:  5'- cUCGCCGcGGGUggggaACCGAAUgCUCGggCa -3'
miRNA:   3'- aAGCGGUuCCCG-----UGGUUUG-GAGCuaG- -5'
26407 5' -54.6 NC_005345.2 + 16431 0.66 0.682416
Target:  5'- -aCGCCGAGGGacucggcugguuCGCCGAuguguucccCCUCGGUg -3'
miRNA:   3'- aaGCGGUUCCC------------GUGGUUu--------GGAGCUAg -5'
26407 5' -54.6 NC_005345.2 + 23806 0.66 0.682416
Target:  5'- -cUGCCGAcgcucGGGCACUAcguUCUCGAUUg -3'
miRNA:   3'- aaGCGGUU-----CCCGUGGUuu-GGAGCUAG- -5'
26407 5' -54.6 NC_005345.2 + 44079 0.66 0.682416
Target:  5'- -gCGCCGAuGGGCugCAGcuGCUcacagCGGUCu -3'
miRNA:   3'- aaGCGGUU-CCCGugGUU--UGGa----GCUAG- -5'
26407 5' -54.6 NC_005345.2 + 9725 0.66 0.682416
Target:  5'- gUCGCC-GGGGUcgaGCgGgucGGCCUCGAUg -3'
miRNA:   3'- aAGCGGuUCCCG---UGgU---UUGGAGCUAg -5'
26407 5' -54.6 NC_005345.2 + 5603 0.66 0.675665
Target:  5'- -gUGCCGuGGGGCGCCGGGCUcguggccgacgcggUGAUCg -3'
miRNA:   3'- aaGCGGU-UCCCGUGGUUUGGa-------------GCUAG- -5'
26407 5' -54.6 NC_005345.2 + 19393 0.66 0.671155
Target:  5'- -gUGCCGAGcagcgucGCGCCGAGC-UCGGUCg -3'
miRNA:   3'- aaGCGGUUCc------CGUGGUUUGgAGCUAG- -5'
26407 5' -54.6 NC_005345.2 + 20421 0.66 0.659856
Target:  5'- -cCGCCGuGGGCGCCGuACCUg---- -3'
miRNA:   3'- aaGCGGUuCCCGUGGUuUGGAgcuag -5'
26407 5' -54.6 NC_005345.2 + 28431 0.66 0.659856
Target:  5'- gUCGCCGAGGGCcGCgAGauguACCgCGAg- -3'
miRNA:   3'- aAGCGGUUCCCG-UGgUU----UGGaGCUag -5'
26407 5' -54.6 NC_005345.2 + 22502 0.66 0.659856
Target:  5'- gUUCGCCcaccGCACCucGGCCUCGGUg -3'
miRNA:   3'- -AAGCGGuuccCGUGGu-UUGGAGCUAg -5'
26407 5' -54.6 NC_005345.2 + 18562 0.66 0.659856
Target:  5'- cUCGCCGGGuGcGCGCCcAGCgUCGGg- -3'
miRNA:   3'- aAGCGGUUC-C-CGUGGuUUGgAGCUag -5'
26407 5' -54.6 NC_005345.2 + 17970 0.66 0.659856
Target:  5'- -cCGCCugccGGGC-CgcGGCCUCGAUCu -3'
miRNA:   3'- aaGCGGuu--CCCGuGguUUGGAGCUAG- -5'
26407 5' -54.6 NC_005345.2 + 24631 0.66 0.648529
Target:  5'- gUCGCC--GGGCGCCucGCggUGGUCg -3'
miRNA:   3'- aAGCGGuuCCCGUGGuuUGgaGCUAG- -5'
26407 5' -54.6 NC_005345.2 + 19108 0.66 0.648529
Target:  5'- gUCGUCGGcccacgcguGGGCGCCGauccgcucggcGACCUCGGc- -3'
miRNA:   3'- aAGCGGUU---------CCCGUGGU-----------UUGGAGCUag -5'
26407 5' -54.6 NC_005345.2 + 29355 0.66 0.648529
Target:  5'- gUCGCCGucGGCguaGCCGAGCCacggcUCGGUg -3'
miRNA:   3'- aAGCGGUucCCG---UGGUUUGG-----AGCUAg -5'
26407 5' -54.6 NC_005345.2 + 21259 0.67 0.641724
Target:  5'- gUCGCCGAGcuguacgucgaacccGGC-CgGGACCUCGAc- -3'
miRNA:   3'- aAGCGGUUC---------------CCGuGgUUUGGAGCUag -5'
26407 5' -54.6 NC_005345.2 + 45373 0.67 0.636051
Target:  5'- aUCGCCAcguccggcgagugGGGGUguGCCAAGCCcaCGcgCg -3'
miRNA:   3'- aAGCGGU-------------UCCCG--UGGUUUGGa-GCuaG- -5'
26407 5' -54.6 NC_005345.2 + 4050 0.67 0.614496
Target:  5'- -gCGCCGAcGaGCGCCGAcacgguauGCCUCGGUg -3'
miRNA:   3'- aaGCGGUUcC-CGUGGUU--------UGGAGCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.