miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26407 5' -54.6 NC_005345.2 + 28890 0.67 0.60204
Target:  5'- -gCGCCAcugcgcgAGGuCGuCCAuGCCUCGAUCg -3'
miRNA:   3'- aaGCGGU-------UCCcGU-GGUuUGGAGCUAG- -5'
26407 5' -54.6 NC_005345.2 + 44345 0.67 0.591872
Target:  5'- aUCGCCGagcugccggGGGGCgAUCGucACCUCGAa- -3'
miRNA:   3'- aAGCGGU---------UCCCG-UGGUu-UGGAGCUag -5'
26407 5' -54.6 NC_005345.2 + 44693 0.67 0.591872
Target:  5'- -cCGCC--GGGCccccGCCGgagccuccacacGACCUCGAUCu -3'
miRNA:   3'- aaGCGGuuCCCG----UGGU------------UUGGAGCUAG- -5'
26407 5' -54.6 NC_005345.2 + 33733 0.67 0.580609
Target:  5'- -aCGCCAAGGGCuACgGcGagUCGAUCg -3'
miRNA:   3'- aaGCGGUUCCCG-UGgUuUggAGCUAG- -5'
26407 5' -54.6 NC_005345.2 + 23008 0.67 0.580609
Target:  5'- cUCGCCGAggucGGGCAuCCGGGCgaaCUCGAc- -3'
miRNA:   3'- aAGCGGUU----CCCGU-GGUUUG---GAGCUag -5'
26407 5' -54.6 NC_005345.2 + 33125 0.67 0.580609
Target:  5'- cUCGCCGcGGGUcucACCcucgcGGGCCUCGggCa -3'
miRNA:   3'- aAGCGGUuCCCG---UGG-----UUUGGAGCuaG- -5'
26407 5' -54.6 NC_005345.2 + 9816 0.68 0.547128
Target:  5'- -aCGCCgAGGGGUGCCucauaguCCUCGAc- -3'
miRNA:   3'- aaGCGG-UUCCCGUGGuuu----GGAGCUag -5'
26407 5' -54.6 NC_005345.2 + 28011 0.68 0.524057
Target:  5'- -gCGUCGAGGaugcggaGCGCgCAGGCCUCGAcgUCg -3'
miRNA:   3'- aaGCGGUUCC-------CGUG-GUUUGGAGCU--AG- -5'
26407 5' -54.6 NC_005345.2 + 34228 0.69 0.50351
Target:  5'- gUUCGCCcGGGGCGgCAcGGCCgcgaacgCGGUCc -3'
miRNA:   3'- -AAGCGGuUCCCGUgGU-UUGGa------GCUAG- -5'
26407 5' -54.6 NC_005345.2 + 19992 0.69 0.492837
Target:  5'- gUUCGCCGAGGGCgacaggcgggcuGCCGGGCa-CGAg- -3'
miRNA:   3'- -AAGCGGUUCCCG------------UGGUUUGgaGCUag -5'
26407 5' -54.6 NC_005345.2 + 18974 0.69 0.489655
Target:  5'- cUCGCCGcauGGGuCGCCGcuggccggcgggacGACCUCGAc- -3'
miRNA:   3'- aAGCGGUu--CCC-GUGGU--------------UUGGAGCUag -5'
26407 5' -54.6 NC_005345.2 + 46298 0.69 0.482269
Target:  5'- gUCGCCAuGGGgGCUAGACCUU--UCc -3'
miRNA:   3'- aAGCGGUuCCCgUGGUUUGGAGcuAG- -5'
26407 5' -54.6 NC_005345.2 + 5532 0.7 0.45125
Target:  5'- -cCGCCGGGGG-GCCcGACCU-GAUCa -3'
miRNA:   3'- aaGCGGUUCCCgUGGuUUGGAgCUAG- -5'
26407 5' -54.6 NC_005345.2 + 34784 0.7 0.431189
Target:  5'- gUCGCCGAGcuGCGCCGggUCgCGGUCc -3'
miRNA:   3'- aAGCGGUUCc-CGUGGUuuGGaGCUAG- -5'
26407 5' -54.6 NC_005345.2 + 4169 0.7 0.41166
Target:  5'- -cCGUCGAGGGUACU-GGCCUCGGa- -3'
miRNA:   3'- aaGCGGUUCCCGUGGuUUGGAGCUag -5'
26407 5' -54.6 NC_005345.2 + 8957 0.71 0.402103
Target:  5'- -cUGCCGAGcuGCACgCcGGCCUCGAUCg -3'
miRNA:   3'- aaGCGGUUCc-CGUG-GuUUGGAGCUAG- -5'
26407 5' -54.6 NC_005345.2 + 39937 0.71 0.396437
Target:  5'- gUCGCCGGGacuacguacgcguacGGCACCccGGCgUCGAUCa -3'
miRNA:   3'- aAGCGGUUC---------------CCGUGGu-UUGgAGCUAG- -5'
26407 5' -54.6 NC_005345.2 + 18604 0.71 0.392688
Target:  5'- cUCGCCGAGGGUcUCGGcauacuGCC-CGAUCg -3'
miRNA:   3'- aAGCGGUUCCCGuGGUU------UGGaGCUAG- -5'
26407 5' -54.6 NC_005345.2 + 42584 0.71 0.387109
Target:  5'- gUCGCCGGGcGGCAggaucgaguacagcuCgCGAGCCUCGGUg -3'
miRNA:   3'- aAGCGGUUC-CCGU---------------G-GUUUGGAGCUAg -5'
26407 5' -54.6 NC_005345.2 + 23646 0.71 0.383418
Target:  5'- gUUCGCCGAGgcggacGGCGCC-GACCagGGUCg -3'
miRNA:   3'- -AAGCGGUUC------CCGUGGuUUGGagCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.