miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26408 3' -52.7 NC_005345.2 + 29617 0.66 0.842213
Target:  5'- --aGAUCGcccGGGAGacgggcgGGAGACG-GGCg -3'
miRNA:   3'- agaCUAGUa--CCCUUa------CCUCUGCgCCG- -5'
26408 3' -52.7 NC_005345.2 + 21625 0.66 0.83317
Target:  5'- cCUGAUC---GGGcgGGAGAUcgauccucaGCGGCu -3'
miRNA:   3'- aGACUAGuacCCUuaCCUCUG---------CGCCG- -5'
26408 3' -52.7 NC_005345.2 + 12860 0.66 0.814428
Target:  5'- -gUGAcgUCGUGGGggUGGcucgccgccgGGugGCcGCu -3'
miRNA:   3'- agACU--AGUACCCuuACC----------UCugCGcCG- -5'
26408 3' -52.7 NC_005345.2 + 4447 0.66 0.814428
Target:  5'- --aGGUCGUGuGGAGgcuccggcGGGGGCcCGGCg -3'
miRNA:   3'- agaCUAGUAC-CCUUa-------CCUCUGcGCCG- -5'
26408 3' -52.7 NC_005345.2 + 43616 0.66 0.80475
Target:  5'- gCUGAUCAggucGGGccccccggcGGGGuCGCGGUa -3'
miRNA:   3'- aGACUAGUa---CCCuua------CCUCuGCGCCG- -5'
26408 3' -52.7 NC_005345.2 + 40350 0.67 0.764258
Target:  5'- gUCUcGUCGUGGcGAGUGGucAGGUGCGcGCa -3'
miRNA:   3'- -AGAcUAGUACC-CUUACC--UCUGCGC-CG- -5'
26408 3' -52.7 NC_005345.2 + 37966 0.68 0.732354
Target:  5'- --gGAUC--GGGAuccgGUGGcucGACGCGGCg -3'
miRNA:   3'- agaCUAGuaCCCU----UACCu--CUGCGCCG- -5'
26408 3' -52.7 NC_005345.2 + 44124 0.68 0.6995
Target:  5'- aCUGGUCGUGGcuGUGGAucguAUGCGGg -3'
miRNA:   3'- aGACUAGUACCcuUACCUc---UGCGCCg -5'
26408 3' -52.7 NC_005345.2 + 49067 0.69 0.666027
Target:  5'- -gUGAUCcgcaGGAuuccGUGGGGAUGUGGCa -3'
miRNA:   3'- agACUAGuac-CCU----UACCUCUGCGCCG- -5'
26408 3' -52.7 NC_005345.2 + 36527 0.69 0.654788
Target:  5'- aCUGG-CGUGGGug-GGcGaACGCGGCc -3'
miRNA:   3'- aGACUaGUACCCuuaCCuC-UGCGCCG- -5'
26408 3' -52.7 NC_005345.2 + 10649 0.69 0.654788
Target:  5'- -gUGAcUCA-GGGAccgcggaccgGUGG-GGCGCGGCg -3'
miRNA:   3'- agACU-AGUaCCCU----------UACCuCUGCGCCG- -5'
26408 3' -52.7 NC_005345.2 + 33366 0.69 0.654787
Target:  5'- --aGAgggGUGGGGGcGGuGGCGCGGCc -3'
miRNA:   3'- agaCUag-UACCCUUaCCuCUGCGCCG- -5'
26408 3' -52.7 NC_005345.2 + 8847 0.72 0.499692
Target:  5'- gCUGcggCAcGGuGAAcGGGGGCGCGGCa -3'
miRNA:   3'- aGACua-GUaCC-CUUaCCUCUGCGCCG- -5'
26408 3' -52.7 NC_005345.2 + 40243 0.74 0.390031
Target:  5'- -gUGAUCcUGGcGAGcGGGGACGgGGCg -3'
miRNA:   3'- agACUAGuACC-CUUaCCUCUGCgCCG- -5'
26408 3' -52.7 NC_005345.2 + 37023 1.14 0.000768
Target:  5'- aUCUGAUCAUGGGAAUGGAGACGCGGCa -3'
miRNA:   3'- -AGACUAGUACCCUUACCUCUGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.