miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26408 5' -56.3 NC_005345.2 + 44390 0.66 0.591891
Target:  5'- -gGCGAGGGUgCC-GUCgA-GGUCCGa -3'
miRNA:   3'- aaCGCUCCCAaGGuCAGgUgCUAGGC- -5'
26408 5' -56.3 NC_005345.2 + 32955 0.66 0.591891
Target:  5'- -cGCGAGGcGgacgCCGG-CCGCG-UCCGc -3'
miRNA:   3'- aaCGCUCC-Caa--GGUCaGGUGCuAGGC- -5'
26408 5' -56.3 NC_005345.2 + 31082 0.69 0.434801
Target:  5'- -cGCGAGGGaUUCCAgcuGUCCACcacCCGc -3'
miRNA:   3'- aaCGCUCCC-AAGGU---CAGGUGcuaGGC- -5'
26408 5' -56.3 NC_005345.2 + 46231 0.7 0.397006
Target:  5'- cUGCGuuGGGccgcugcCCGGUCCGCcGAUCCGc -3'
miRNA:   3'- aACGCu-CCCaa-----GGUCAGGUG-CUAGGC- -5'
26408 5' -56.3 NC_005345.2 + 43357 0.7 0.387893
Target:  5'- -gGCGAGGGggugCCGGUCgACGcguacgCCGa -3'
miRNA:   3'- aaCGCUCCCaa--GGUCAGgUGCua----GGC- -5'
26408 5' -56.3 NC_005345.2 + 22361 0.73 0.248371
Target:  5'- cUGCGAcGcGGcgCCGG-CCACGAUCCGc -3'
miRNA:   3'- aACGCU-C-CCaaGGUCaGGUGCUAGGC- -5'
26408 5' -56.3 NC_005345.2 + 36082 0.74 0.21206
Target:  5'- -gGCGGGGGaugggUCCGGUCCacACGAUgCCGc -3'
miRNA:   3'- aaCGCUCCCa----AGGUCAGG--UGCUA-GGC- -5'
26408 5' -56.3 NC_005345.2 + 37057 1.07 0.000965
Target:  5'- cUUGCGAGGGUUCCAGUCCACGAUCCGa -3'
miRNA:   3'- -AACGCUCCCAAGGUCAGGUGCUAGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.