Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2641 | 5' | -56.6 | NC_001491.2 | + | 73391 | 0.69 | 0.694315 |
Target: 5'- uUCUGGCaGCCuGCGaGCGGUGCaGGGUa -3' miRNA: 3'- uAGAUUGaUGG-CGUgUGCCGCG-CCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 67563 | 0.7 | 0.684193 |
Target: 5'- ----cGCU-CCGCGCugGGCcUGGGCg -3' miRNA: 3'- uagauUGAuGGCGUGugCCGcGCCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 105045 | 0.7 | 0.681148 |
Target: 5'- ---gGGCcGCCGCAgauuuggccggggcCGCGGCGgGGGCc -3' miRNA: 3'- uagaUUGaUGGCGU--------------GUGCCGCgCCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 104979 | 0.7 | 0.681148 |
Target: 5'- ---gGGCcGCCGCAgauuuggccggggcCGCGGCGgGGGCc -3' miRNA: 3'- uagaUUGaUGGCGU--------------GUGCCGCgCCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 3823 | 0.7 | 0.643362 |
Target: 5'- -gCUGGCUgGCCGCGgcaGCGGCGgccUGGGCc -3' miRNA: 3'- uaGAUUGA-UGGCGUg--UGCCGC---GCCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 115950 | 0.71 | 0.592177 |
Target: 5'- cUCUAACU-UCGUACGCGGUccgcgGCGuGGCg -3' miRNA: 3'- uAGAUUGAuGGCGUGUGCCG-----CGC-CCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 120256 | 0.72 | 0.541711 |
Target: 5'- uUUUGACUuuGCCGCuCugGGuCGCGcGGCg -3' miRNA: 3'- uAGAUUGA--UGGCGuGugCC-GCGC-CCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 1945 | 0.72 | 0.521909 |
Target: 5'- --gUGGCgcucccgggGCCaGCGCACGGCGCaGGCg -3' miRNA: 3'- uagAUUGa--------UGG-CGUGUGCCGCGcCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 100943 | 0.73 | 0.492756 |
Target: 5'- --gUGGCgACUGCACAUGGCG-GGGCc -3' miRNA: 3'- uagAUUGaUGGCGUGUGCCGCgCCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 26979 | 0.75 | 0.410325 |
Target: 5'- gAUCcacgAGgUACCGCccCACGGCGCGGcGCa -3' miRNA: 3'- -UAGa---UUgAUGGCGu-GUGCCGCGCC-CG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 5500 | 0.78 | 0.254855 |
Target: 5'- uUCUGGCUGCCGUACAgcaGGUcgggcgcgGCGGGCu -3' miRNA: 3'- uAGAUUGAUGGCGUGUg--CCG--------CGCCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 127382 | 1.09 | 0.002239 |
Target: 5'- aAUCUAACUACCGCACACGGCGCGGGCu -3' miRNA: 3'- -UAGAUUGAUGGCGUGUGCCGCGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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