Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26410 | 3' | -50.2 | NC_005345.2 | + | 21649 | 0.67 | 0.89846 |
Target: 5'- gCAGc---UGCUcGUCGAUGAUcuGCCCCg -3' miRNA: 3'- -GUCuaacACGA-CAGCUACUAc-UGGGG- -5' |
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26410 | 3' | -50.2 | NC_005345.2 | + | 16904 | 0.67 | 0.89846 |
Target: 5'- -uGAccGUGCg--CG-UGGUGACCCCg -3' miRNA: 3'- guCUaaCACGacaGCuACUACUGGGG- -5' |
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26410 | 3' | -50.2 | NC_005345.2 | + | 48108 | 0.68 | 0.840882 |
Target: 5'- aAGAg---GCUcGUCGA-GGUGAUCCCa -3' miRNA: 3'- gUCUaacaCGA-CAGCUaCUACUGGGG- -5' |
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26410 | 3' | -50.2 | NC_005345.2 | + | 38099 | 1.13 | 0.001483 |
Target: 5'- gCAGAUUGUGCUGUCGAUGAUGACCCCg -3' miRNA: 3'- -GUCUAACACGACAGCUACUACUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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