Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26410 | 5' | -53.2 | NC_005345.2 | + | 3483 | 0.66 | 0.818134 |
Target: 5'- uCCGGgugcacugcccGGUCGUCGCagg---CGAGGACg -3' miRNA: 3'- -GGCC-----------CCAGCAGUGgaugaaGCUCUUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 18553 | 0.67 | 0.758792 |
Target: 5'- cUCGGGG-CGcUCGCCgggUGCgcgcccagcgUCGGGAACa -3' miRNA: 3'- -GGCCCCaGC-AGUGG---AUGa---------AGCUCUUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 44148 | 0.67 | 0.748373 |
Target: 5'- gCGGGcUCGUCACC-AUggCGAGcGCg -3' miRNA: 3'- gGCCCcAGCAGUGGaUGaaGCUCuUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 40065 | 0.68 | 0.705612 |
Target: 5'- gCGGGGacCGUCACCgucgACcgCGGGcAGCa -3' miRNA: 3'- gGCCCCa-GCAGUGGa---UGaaGCUC-UUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 3974 | 0.75 | 0.326589 |
Target: 5'- cCCGGGuUCGUCACCcucgcguguccccGCUcgUCGAGAGCa -3' miRNA: 3'- -GGCCCcAGCAGUGGa------------UGA--AGCUCUUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 38133 | 1.12 | 0.000984 |
Target: 5'- gCCGGGGUCGUCACCUACUUCGAGAACg -3' miRNA: 3'- -GGCCCCAGCAGUGGAUGAAGCUCUUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 44356 | 0.72 | 0.477281 |
Target: 5'- gCCGGGGggcgaUCGUCACCUcgaacgggucGCcggCGAGggUg -3' miRNA: 3'- -GGCCCC-----AGCAGUGGA----------UGaa-GCUCuuG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 35439 | 0.71 | 0.52971 |
Target: 5'- gUCGGGGUCccaugugaacUCGCCgcaUUCGAGGGCg -3' miRNA: 3'- -GGCCCCAGc---------AGUGGaugAAGCUCUUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 31247 | 0.71 | 0.540459 |
Target: 5'- uCCGGGGUCGggugcgCACUcgggUGCgcgggugCGGGGGCg -3' miRNA: 3'- -GGCCCCAGCa-----GUGG----AUGaa-----GCUCUUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 27994 | 0.7 | 0.573111 |
Target: 5'- gCGGGG-CGUCGCgUaggGCgUCGAGGAUg -3' miRNA: 3'- gGCCCCaGCAGUGgA---UGaAGCUCUUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 18239 | 0.69 | 0.650598 |
Target: 5'- gCCGGcGGUCGUCACCggg-UUGcAGAucaGCa -3' miRNA: 3'- -GGCC-CCAGCAGUGGaugaAGC-UCU---UG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 43962 | 0.68 | 0.683746 |
Target: 5'- gCCGGGG-CGg-ACCUcgggcgagcCUUCGAGGGCg -3' miRNA: 3'- -GGCCCCaGCagUGGAu--------GAAGCUCUUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 1450 | 0.68 | 0.705612 |
Target: 5'- aCGGGGUCGUCguACCggaUGCcgUCGgccgugaugcGGAGCg -3' miRNA: 3'- gGCCCCAGCAG--UGG---AUGa-AGC----------UCUUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 3302 | 0.67 | 0.758792 |
Target: 5'- gUCGaGGG-CGUCGgCgagUGCUUCGAGggUg -3' miRNA: 3'- -GGC-CCCaGCAGUgG---AUGAAGCUCuuG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 38935 | 0.67 | 0.769079 |
Target: 5'- aCGGGGUCGUgcuUGCCgauCUUCGgcauGGGAUc -3' miRNA: 3'- gGCCCCAGCA---GUGGau-GAAGC----UCUUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 3716 | 0.66 | 0.82739 |
Target: 5'- gCCGGGGgg--UGCCUGCgacgUCGAcGACg -3' miRNA: 3'- -GGCCCCagcaGUGGAUGa---AGCUcUUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 16471 | 0.66 | 0.836438 |
Target: 5'- aCGGGGUCagGUCgACCUcgGCcUCGAcGGCg -3' miRNA: 3'- gGCCCCAG--CAG-UGGA--UGaAGCUcUUG- -5' |
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26410 | 5' | -53.2 | NC_005345.2 | + | 29085 | 0.66 | 0.836438 |
Target: 5'- cCCGGGGUgG------GCUUCGAGGGCu -3' miRNA: 3'- -GGCCCCAgCaguggaUGAAGCUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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