miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26411 3' -49.7 NC_005345.2 + 14502 0.66 0.936355
Target:  5'- ----gCGACcGCGACGCCGAG-CGGc -3'
miRNA:   3'- gacaaGCUGaUGUUGUGGCUCaGCUa -5'
26411 3' -49.7 NC_005345.2 + 15299 0.66 0.936355
Target:  5'- -cGUUCGGCUACucguCGCCcggcuguaGGUCGGUg -3'
miRNA:   3'- gaCAAGCUGAUGuu--GUGGc-------UCAGCUA- -5'
26411 3' -49.7 NC_005345.2 + 5038 0.66 0.924739
Target:  5'- ---gUCGACgagcGCAGCAUCGAGggCGAg -3'
miRNA:   3'- gacaAGCUGa---UGUUGUGGCUCa-GCUa -5'
26411 3' -49.7 NC_005345.2 + 4036 0.66 0.924739
Target:  5'- cCUGUgCGACgACGGCGCCGA--CGAg -3'
miRNA:   3'- -GACAaGCUGaUGUUGUGGCUcaGCUa -5'
26411 3' -49.7 NC_005345.2 + 42362 0.67 0.918474
Target:  5'- aCUGUgCGACUcCAgccgccacACGCCGAGgUCGGg -3'
miRNA:   3'- -GACAaGCUGAuGU--------UGUGGCUC-AGCUa -5'
26411 3' -49.7 NC_005345.2 + 6346 0.67 0.911906
Target:  5'- -cGUaCGGCacgaGCGGCGCCGGGUUGGc -3'
miRNA:   3'- gaCAaGCUGa---UGUUGUGGCUCAGCUa -5'
26411 3' -49.7 NC_005345.2 + 9876 0.67 0.911906
Target:  5'- gCUGcUCGACgaGCAGCAgCGGGcCGAa -3'
miRNA:   3'- -GACaAGCUGa-UGUUGUgGCUCaGCUa -5'
26411 3' -49.7 NC_005345.2 + 7322 0.67 0.911906
Target:  5'- aUGagUCGGCg--GACGCCGAGUCGc- -3'
miRNA:   3'- gACa-AGCUGaugUUGUGGCUCAGCua -5'
26411 3' -49.7 NC_005345.2 + 29769 0.67 0.905037
Target:  5'- gCUGcUCGGC-ACGAcCGCCGAGUCc-- -3'
miRNA:   3'- -GACaAGCUGaUGUU-GUGGCUCAGcua -5'
26411 3' -49.7 NC_005345.2 + 6999 0.67 0.904334
Target:  5'- gCUGUcgaUGGCUGCugcgaucGACGCCGGGUCGc- -3'
miRNA:   3'- -GACAa--GCUGAUG-------UUGUGGCUCAGCua -5'
26411 3' -49.7 NC_005345.2 + 27116 0.67 0.897869
Target:  5'- aUGcUCGGCgccacgGCGGCACCGGccggcGUCGAg -3'
miRNA:   3'- gACaAGCUGa-----UGUUGUGGCU-----CAGCUa -5'
26411 3' -49.7 NC_005345.2 + 19420 0.67 0.890407
Target:  5'- ---gUCGGCUGCGccgcgucggucGCACCGGGcUCGGg -3'
miRNA:   3'- gacaAGCUGAUGU-----------UGUGGCUC-AGCUa -5'
26411 3' -49.7 NC_005345.2 + 18583 0.68 0.874622
Target:  5'- ---gUCGGgaACAcCGCCGGGUCGAa -3'
miRNA:   3'- gacaAGCUgaUGUuGUGGCUCAGCUa -5'
26411 3' -49.7 NC_005345.2 + 18318 0.68 0.869668
Target:  5'- gUGUUCuGCUGCAGCcacgccgcgacgucgGcCCGGGUCGAg -3'
miRNA:   3'- gACAAGcUGAUGUUG---------------U-GGCUCAGCUa -5'
26411 3' -49.7 NC_005345.2 + 23576 0.68 0.866311
Target:  5'- -cGUcCGAgCUGCGGCugCGGGUCGc- -3'
miRNA:   3'- gaCAaGCU-GAUGUUGugGCUCAGCua -5'
26411 3' -49.7 NC_005345.2 + 4566 0.68 0.857733
Target:  5'- gUGUaCGACUGCuGC-CCGAGUcCGGUc -3'
miRNA:   3'- gACAaGCUGAUGuUGuGGCUCA-GCUA- -5'
26411 3' -49.7 NC_005345.2 + 36039 0.68 0.848894
Target:  5'- -cGUUCGAggugaaagcGCGGCACCGAGUCa-- -3'
miRNA:   3'- gaCAAGCUga-------UGUUGUGGCUCAGcua -5'
26411 3' -49.7 NC_005345.2 + 14780 0.69 0.820917
Target:  5'- ---gUCGACUGCAACGCCccggugcgcuucGAcGUCGAg -3'
miRNA:   3'- gacaAGCUGAUGUUGUGG------------CU-CAGCUa -5'
26411 3' -49.7 NC_005345.2 + 22837 0.69 0.811139
Target:  5'- gCUGaUCGACgACGGucaucccgguCGCCGGGUCGGUg -3'
miRNA:   3'- -GACaAGCUGaUGUU----------GUGGCUCAGCUA- -5'
26411 3' -49.7 NC_005345.2 + 32652 0.7 0.759396
Target:  5'- -cGUUCGACUucaaccuCGACGCCGucgaggccgaGGUCGAc -3'
miRNA:   3'- gaCAAGCUGAu------GUUGUGGC----------UCAGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.