miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26411 5' -56.1 NC_005345.2 + 3338 0.66 0.652907
Target:  5'- aCU-CGGGCUGcGGgcGCCGcGuUCGAucGCg -3'
miRNA:   3'- -GAuGCCCGAC-CCaaCGGCuC-AGCU--UG- -5'
26411 5' -56.1 NC_005345.2 + 10299 0.66 0.652907
Target:  5'- -cGCGGGCUGuGGgagcgGCCcGGcaCGAGCg -3'
miRNA:   3'- gaUGCCCGAC-CCaa---CGGcUCa-GCUUG- -5'
26411 5' -56.1 NC_005345.2 + 29055 0.66 0.630817
Target:  5'- uCUGCGuGGCggcggcGGGcucGCCGAGaccgCGAGCu -3'
miRNA:   3'- -GAUGC-CCGa-----CCCaa-CGGCUCa---GCUUG- -5'
26411 5' -56.1 NC_005345.2 + 10039 0.66 0.619769
Target:  5'- aUGCGGGCUGcuc-GCCGAGgacgCGAu- -3'
miRNA:   3'- gAUGCCCGACccaaCGGCUCa---GCUug -5'
26411 5' -56.1 NC_005345.2 + 32912 0.66 0.608731
Target:  5'- gCUGCGGGCcggucgaucagGGGUagcgcaGCUGcuuGUCGAGCg -3'
miRNA:   3'- -GAUGCCCGa----------CCCAa-----CGGCu--CAGCUUG- -5'
26411 5' -56.1 NC_005345.2 + 14817 0.66 0.608731
Target:  5'- -gGCGGGCgcGGGUgugGUCGAcgccCGAGCa -3'
miRNA:   3'- gaUGCCCGa-CCCAa--CGGCUca--GCUUG- -5'
26411 5' -56.1 NC_005345.2 + 5276 0.66 0.608731
Target:  5'- -gGCGGGCUcgggggucGGGUacUGCgGGGggCGGGCc -3'
miRNA:   3'- gaUGCCCGA--------CCCA--ACGgCUCa-GCUUG- -5'
26411 5' -56.1 NC_005345.2 + 44379 0.67 0.597714
Target:  5'- -aACGGGUcgccggcgaGGGUgccgucgagGuCCGAGUCGAGCc -3'
miRNA:   3'- gaUGCCCGa--------CCCAa--------C-GGCUCAGCUUG- -5'
26411 5' -56.1 NC_005345.2 + 10612 0.67 0.575778
Target:  5'- -aGCGGcGCggccGGUcgGcCCGGGUCGAGCa -3'
miRNA:   3'- gaUGCC-CGac--CCAa-C-GGCUCAGCUUG- -5'
26411 5' -56.1 NC_005345.2 + 35542 0.67 0.575778
Target:  5'- -cGCgGGGCUcGGGcaccGCCGgcgGGUCGAGCc -3'
miRNA:   3'- gaUG-CCCGA-CCCaa--CGGC---UCAGCUUG- -5'
26411 5' -56.1 NC_005345.2 + 17504 0.67 0.564875
Target:  5'- aCUGCGGGCcgccGGUcGCCG-GcCGGGCg -3'
miRNA:   3'- -GAUGCCCGac--CCAaCGGCuCaGCUUG- -5'
26411 5' -56.1 NC_005345.2 + 45573 0.68 0.500869
Target:  5'- -gGCGGGCcGGuugcgGCCGGGggccgCGAACg -3'
miRNA:   3'- gaUGCCCGaCCcaa--CGGCUCa----GCUUG- -5'
26411 5' -56.1 NC_005345.2 + 8693 0.69 0.470067
Target:  5'- -cACGGGUUGuc--GCCGAuGUCGAACg -3'
miRNA:   3'- gaUGCCCGACccaaCGGCU-CAGCUUG- -5'
26411 5' -56.1 NC_005345.2 + 39203 0.69 0.470067
Target:  5'- --cCGGGCcgcGGGUUGgCGAccGUCGGGCc -3'
miRNA:   3'- gauGCCCGa--CCCAACgGCU--CAGCUUG- -5'
26411 5' -56.1 NC_005345.2 + 34686 0.69 0.470067
Target:  5'- ---aGGGCgucgGGGaUGCCGAGcgagucggCGAGCg -3'
miRNA:   3'- gaugCCCGa---CCCaACGGCUCa-------GCUUG- -5'
26411 5' -56.1 NC_005345.2 + 8947 0.69 0.430565
Target:  5'- -gGCGGGCUGcGGgUGCuCGGGcUCGAc- -3'
miRNA:   3'- gaUGCCCGAC-CCaACG-GCUC-AGCUug -5'
26411 5' -56.1 NC_005345.2 + 46004 0.69 0.430565
Target:  5'- -gGCGGGCccucgGGGUcGCuCcGGUCGGACg -3'
miRNA:   3'- gaUGCCCGa----CCCAaCG-GcUCAGCUUG- -5'
26411 5' -56.1 NC_005345.2 + 43349 0.7 0.39308
Target:  5'- cCUACaaGGGCgagGGGgUGCCG-GUCGAcGCg -3'
miRNA:   3'- -GAUG--CCCGa--CCCaACGGCuCAGCU-UG- -5'
26411 5' -56.1 NC_005345.2 + 22992 0.73 0.258934
Target:  5'- aCU-CGGGCUcgGGGUccucGCCGAgGUCGGGCa -3'
miRNA:   3'- -GAuGCCCGA--CCCAa---CGGCU-CAGCUUG- -5'
26411 5' -56.1 NC_005345.2 + 24641 0.77 0.143371
Target:  5'- gUGCGGGCcGGGUUggucGCCGA-UCGAGCg -3'
miRNA:   3'- gAUGCCCGaCCCAA----CGGCUcAGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.