miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26412 3' -61.8 NC_005345.2 + 20268 0.66 0.381951
Target:  5'- cCUCGCGCaGUGGcGC-CCGuagUGCCCg -3'
miRNA:   3'- cGAGUGCGgCACCcCGuGGCu--GCGGG- -5'
26412 3' -61.8 NC_005345.2 + 22614 0.66 0.381951
Target:  5'- cGCU-GCGCCuGcGGuGGUuCCGGCGCUCg -3'
miRNA:   3'- -CGAgUGCGG-CaCC-CCGuGGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 46142 0.66 0.381951
Target:  5'- cCUCggaACGCgGUGGGuucCACCGGgcaGCCCu -3'
miRNA:   3'- cGAG---UGCGgCACCCc--GUGGCUg--CGGG- -5'
26412 3' -61.8 NC_005345.2 + 46071 0.66 0.381951
Target:  5'- -aUCAgGCgGccGGGGcCGCCGGgGCCUg -3'
miRNA:   3'- cgAGUgCGgCa-CCCC-GUGGCUgCGGG- -5'
26412 3' -61.8 NC_005345.2 + 41344 0.66 0.381951
Target:  5'- cGUUCACGgCGUccGGcGGCGgCGcaGCGCUCg -3'
miRNA:   3'- -CGAGUGCgGCA--CC-CCGUgGC--UGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 18210 0.66 0.381951
Target:  5'- cGgUCGCgGCCGUGcaccgugagcGGGcCGCCGGCGgUCg -3'
miRNA:   3'- -CgAGUG-CGGCAC----------CCC-GUGGCUGCgGG- -5'
26412 3' -61.8 NC_005345.2 + 14917 0.66 0.381102
Target:  5'- cGUUCGCgGCCGUGccgccccGGGCgaACUGcUGCCCc -3'
miRNA:   3'- -CGAGUG-CGGCAC-------CCCG--UGGCuGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 11489 0.66 0.373515
Target:  5'- gGC-CGCGCagGcGGcccGCACCGACGCCg -3'
miRNA:   3'- -CGaGUGCGg-CaCCc--CGUGGCUGCGGg -5'
26412 3' -61.8 NC_005345.2 + 18255 0.66 0.373515
Target:  5'- uGCUgCuCGCCGgcc-GCGCCGuCGCCCg -3'
miRNA:   3'- -CGA-GuGCGGCacccCGUGGCuGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 25040 0.66 0.365206
Target:  5'- ---gACGUCGUGGGcauguaCGCCGAC-CCCg -3'
miRNA:   3'- cgagUGCGGCACCCc-----GUGGCUGcGGG- -5'
26412 3' -61.8 NC_005345.2 + 38863 0.66 0.365206
Target:  5'- cGCUCGgguccgguguCGCCGgccgcgagUGGacGGCAgagaUCGGCGCCCg -3'
miRNA:   3'- -CGAGU----------GCGGC--------ACC--CCGU----GGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 40802 0.66 0.365206
Target:  5'- aCUCACGacgaCCG-GGGcguGCACCGcCGCCg -3'
miRNA:   3'- cGAGUGC----GGCaCCC---CGUGGCuGCGGg -5'
26412 3' -61.8 NC_005345.2 + 46392 0.66 0.365206
Target:  5'- aGC-CACGCCGUccgaaGGcGGCACuuguCGACcGCCg -3'
miRNA:   3'- -CGaGUGCGGCA-----CC-CCGUG----GCUG-CGGg -5'
26412 3' -61.8 NC_005345.2 + 10580 0.66 0.365206
Target:  5'- aGCgccacgUACGCCGUGccgguGGGCGCguACGCCg -3'
miRNA:   3'- -CGa-----GUGCGGCAC-----CCCGUGgcUGCGGg -5'
26412 3' -61.8 NC_005345.2 + 9526 0.66 0.365206
Target:  5'- uCUCGuCGuCCGUGcGGGUccacacGCCGAgcUGCCCc -3'
miRNA:   3'- cGAGU-GC-GGCAC-CCCG------UGGCU--GCGGG- -5'
26412 3' -61.8 NC_005345.2 + 36556 0.66 0.365206
Target:  5'- aGCUCguGCGCUucgGGGGCGgCGACaCCg -3'
miRNA:   3'- -CGAG--UGCGGca-CCCCGUgGCUGcGGg -5'
26412 3' -61.8 NC_005345.2 + 33301 0.66 0.365206
Target:  5'- uGCUCGCccaCCGcgaGcGGGC-CCG-CGCCCa -3'
miRNA:   3'- -CGAGUGc--GGCa--C-CCCGuGGCuGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 25230 0.66 0.357025
Target:  5'- aGCUCACGCaCGac-GGCucgUCGGCGCUCg -3'
miRNA:   3'- -CGAGUGCG-GCaccCCGu--GGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 32759 0.66 0.355405
Target:  5'- -aUCAUGCCccucaugGUGGcGGCGCagagcggCGACGCCg -3'
miRNA:   3'- cgAGUGCGG-------CACC-CCGUG-------GCUGCGGg -5'
26412 3' -61.8 NC_005345.2 + 35218 0.67 0.348974
Target:  5'- -aUCugGCUGUGGaagucGGCgcucaaGCCGGCGUUCg -3'
miRNA:   3'- cgAGugCGGCACC-----CCG------UGGCUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.