miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26412 5' -51.9 NC_005345.2 + 33252 0.66 0.895316
Target:  5'- aUCGUcacgggguacaGCUCGGUGcCCGggucCAUGUCGa- -3'
miRNA:   3'- -AGCA-----------UGAGCUACuGGCa---GUGCAGCag -5'
26412 5' -51.9 NC_005345.2 + 19411 0.66 0.895316
Target:  5'- cCGaGCUCGGUcGGCUGcgcCGCGUCGgUCg -3'
miRNA:   3'- aGCaUGAGCUA-CUGGCa--GUGCAGC-AG- -5'
26412 5' -51.9 NC_005345.2 + 8558 0.66 0.887991
Target:  5'- cCGUGCUCGccggcugcGAUCGUCcauGCGggCGUCa -3'
miRNA:   3'- aGCAUGAGCua------CUGGCAG---UGCa-GCAG- -5'
26412 5' -51.9 NC_005345.2 + 40044 0.66 0.886494
Target:  5'- gUCGagcaGCUCGAccacacagcgggGACCGUCAcCGUCGa- -3'
miRNA:   3'- -AGCa---UGAGCUa-----------CUGGCAGU-GCAGCag -5'
26412 5' -51.9 NC_005345.2 + 8715 0.66 0.880396
Target:  5'- aCGUGCgCGGgccGAUCGcCGCGUCGg- -3'
miRNA:   3'- aGCAUGaGCUa--CUGGCaGUGCAGCag -5'
26412 5' -51.9 NC_005345.2 + 27564 0.66 0.872537
Target:  5'- -gGUGCcguUCGGggGGCCGUCGgGcCGUCu -3'
miRNA:   3'- agCAUG---AGCUa-CUGGCAGUgCaGCAG- -5'
26412 5' -51.9 NC_005345.2 + 919 0.66 0.872537
Target:  5'- cCGcagaUCGAccGgCGUCACGUCGUCg -3'
miRNA:   3'- aGCaug-AGCUacUgGCAGUGCAGCAG- -5'
26412 5' -51.9 NC_005345.2 + 10184 0.66 0.86442
Target:  5'- gUCGcGC-CGAUcucGACCGcgcUCGCGUCGUa -3'
miRNA:   3'- -AGCaUGaGCUA---CUGGC---AGUGCAGCAg -5'
26412 5' -51.9 NC_005345.2 + 33704 0.67 0.856053
Target:  5'- gCG-GCUCGG-GGCCGUCGCGggCGa- -3'
miRNA:   3'- aGCaUGAGCUaCUGGCAGUGCa-GCag -5'
26412 5' -51.9 NC_005345.2 + 37241 0.67 0.856053
Target:  5'- uUCGggaACUCGAUGGCUGaCGCGaUGUa -3'
miRNA:   3'- -AGCa--UGAGCUACUGGCaGUGCaGCAg -5'
26412 5' -51.9 NC_005345.2 + 24244 0.67 0.855204
Target:  5'- ---cGCgCGGUGAgaucucuCCGaUCACGUCGUCg -3'
miRNA:   3'- agcaUGaGCUACU-------GGC-AGUGCAGCAG- -5'
26412 5' -51.9 NC_005345.2 + 28761 0.67 0.854351
Target:  5'- gCGgggccgGCUCGGUGACgGUCAUGaggcgcaugacgCGUCc -3'
miRNA:   3'- aGCa-----UGAGCUACUGgCAGUGCa-----------GCAG- -5'
26412 5' -51.9 NC_005345.2 + 8958 0.67 0.820252
Target:  5'- -gGUGCUCGGgcucGACCuGUCGCucCGUCg -3'
miRNA:   3'- agCAUGAGCUa---CUGG-CAGUGcaGCAG- -5'
26412 5' -51.9 NC_005345.2 + 29484 0.68 0.810765
Target:  5'- cUCGUcgaGCUCGucggcgcUGAacacgucggcauUCGUCAUGUCGUCg -3'
miRNA:   3'- -AGCA---UGAGCu------ACU------------GGCAGUGCAGCAG- -5'
26412 5' -51.9 NC_005345.2 + 10676 0.68 0.791221
Target:  5'- cCGauCagGGUGugCGUCGCGUCGUa -3'
miRNA:   3'- aGCauGagCUACugGCAGUGCAGCAg -5'
26412 5' -51.9 NC_005345.2 + 8667 0.68 0.778144
Target:  5'- cCGUGCUgcugcucgccgcggCGGUGGCCGUgACGUgGg- -3'
miRNA:   3'- aGCAUGA--------------GCUACUGGCAgUGCAgCag -5'
26412 5' -51.9 NC_005345.2 + 37292 0.68 0.760648
Target:  5'- gUCGUGCagggcCGAUGcccacGCCGUgGCGUCGa- -3'
miRNA:   3'- -AGCAUGa----GCUAC-----UGGCAgUGCAGCag -5'
26412 5' -51.9 NC_005345.2 + 45727 0.69 0.750169
Target:  5'- gCGUGCgcagCGuccacACCGaCACGUCGUCg -3'
miRNA:   3'- aGCAUGa---GCuac--UGGCaGUGCAGCAG- -5'
26412 5' -51.9 NC_005345.2 + 19079 0.7 0.696154
Target:  5'- cCGUGCUcgcCGAUGagcucGCCGUCgguGUCGUCg -3'
miRNA:   3'- aGCAUGA---GCUAC-----UGGCAGug-CAGCAG- -5'
26412 5' -51.9 NC_005345.2 + 37253 0.7 0.674015
Target:  5'- gCGgGCgaCGgcGGCgGUCGCGUCGUCg -3'
miRNA:   3'- aGCaUGa-GCuaCUGgCAGUGCAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.