miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26413 5' -57.1 NC_005345.2 + 47937 0.66 0.611574
Target:  5'- -cCGACcCGaAGCGUGG-CGAGAUCa- -3'
miRNA:   3'- auGCUGcGC-UCGCGCCaGCUCUAGcc -5'
26413 5' -57.1 NC_005345.2 + 17138 0.66 0.611574
Target:  5'- cGCGGuCGCGA-CGuUGGUCGGGG-CGGu -3'
miRNA:   3'- aUGCU-GCGCUcGC-GCCAGCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 2682 0.66 0.60078
Target:  5'- -uCGAUGCG-GCGgGGcgCGGGAUCa- -3'
miRNA:   3'- auGCUGCGCuCGCgCCa-GCUCUAGcc -5'
26413 5' -57.1 NC_005345.2 + 5268 0.66 0.60078
Target:  5'- gGCGGCaggGCGGGCucgGgGGUCGGGuacugCGGg -3'
miRNA:   3'- aUGCUG---CGCUCG---CgCCAGCUCua---GCC- -5'
26413 5' -57.1 NC_005345.2 + 40616 0.66 0.60078
Target:  5'- aGCGGCGUGccCGaaCGGUCGAGG-CGGc -3'
miRNA:   3'- aUGCUGCGCucGC--GCCAGCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 2360 0.66 0.60078
Target:  5'- gGCGGCGC-AGCcCGGUCGcGAccucgCGGg -3'
miRNA:   3'- aUGCUGCGcUCGcGCCAGCuCUa----GCC- -5'
26413 5' -57.1 NC_005345.2 + 24176 0.66 0.590012
Target:  5'- aAUGGCGCGGG-GCGGuUCGcuGUCGa -3'
miRNA:   3'- aUGCUGCGCUCgCGCC-AGCucUAGCc -5'
26413 5' -57.1 NC_005345.2 + 31459 0.66 0.590012
Target:  5'- -cCGAgGCcGGCGCGGuUCGuacggaucgagcGGAUCGGc -3'
miRNA:   3'- auGCUgCGcUCGCGCC-AGC------------UCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 35767 0.66 0.590012
Target:  5'- gGCGGgGCGGG-GCGGU-GGGuUCGGu -3'
miRNA:   3'- aUGCUgCGCUCgCGCCAgCUCuAGCC- -5'
26413 5' -57.1 NC_005345.2 + 6530 0.66 0.590012
Target:  5'- cACGGgGCGGG-GCGGggCGGGG-CGGu -3'
miRNA:   3'- aUGCUgCGCUCgCGCCa-GCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 32314 0.66 0.585714
Target:  5'- gACGGCGCGgugaagaAGCGCcgugugaucccgaaGGgCGAGGUCGa -3'
miRNA:   3'- aUGCUGCGC-------UCGCG--------------CCaGCUCUAGCc -5'
26413 5' -57.1 NC_005345.2 + 3875 0.67 0.579278
Target:  5'- --gGACGcCGAgugccugcaGCGCGG-CGAGggCGGg -3'
miRNA:   3'- augCUGC-GCU---------CGCGCCaGCUCuaGCC- -5'
26413 5' -57.1 NC_005345.2 + 3420 0.67 0.579278
Target:  5'- --aGGCgGCGGGCGCGG-CGGcGggCGGc -3'
miRNA:   3'- augCUG-CGCUCGCGCCaGCU-CuaGCC- -5'
26413 5' -57.1 NC_005345.2 + 45459 0.67 0.579278
Target:  5'- gGCGGC-CGAGacgGCGGcCGGGGUgGGc -3'
miRNA:   3'- aUGCUGcGCUCg--CGCCaGCUCUAgCC- -5'
26413 5' -57.1 NC_005345.2 + 2679 0.67 0.579278
Target:  5'- gGCGAggcCGCGGGCGuuGUCGAuGUgGGu -3'
miRNA:   3'- aUGCU---GCGCUCGCgcCAGCUcUAgCC- -5'
26413 5' -57.1 NC_005345.2 + 40056 0.67 0.579278
Target:  5'- cGCGACGUGcGgGCGGUCGccggcGA-CGGc -3'
miRNA:   3'- aUGCUGCGCuCgCGCCAGCu----CUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 44830 0.67 0.568587
Target:  5'- -cCGAUGuCGAGaCGCaGGUCGAccUCGGa -3'
miRNA:   3'- auGCUGC-GCUC-GCG-CCAGCUcuAGCC- -5'
26413 5' -57.1 NC_005345.2 + 22155 0.67 0.568587
Target:  5'- cGCGACGCuguggcgagcAGCGcCGGcgcUGGGAUCGGg -3'
miRNA:   3'- aUGCUGCGc---------UCGC-GCCa--GCUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 10291 0.67 0.557945
Target:  5'- --aGAUGCG-GCGCGGgcugUGGGAgCGGc -3'
miRNA:   3'- augCUGCGCuCGCGCCa---GCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 31311 0.67 0.557945
Target:  5'- --gGGCGCugcuGCGCGGUCugGAGggCGGc -3'
miRNA:   3'- augCUGCGcu--CGCGCCAG--CUCuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.