Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26414 | 5' | -53.5 | NC_005345.2 | + | 51 | 0.67 | 0.727043 |
Target: 5'- uGUCGUACCcgGAUgccacauaGAUGCC-ACAUCc -3' miRNA: 3'- -CAGCGUGGuaCUG--------CUGCGGaUGUAGc -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 13234 | 0.67 | 0.716205 |
Target: 5'- uUCGCcgcguccccgaGCCAcccGACGAUGCCgcCGUCGg -3' miRNA: 3'- cAGCG-----------UGGUa--CUGCUGCGGauGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 6705 | 0.67 | 0.716205 |
Target: 5'- aUCGcCGCgCGUGGgGACGCCgaugACgAUCGg -3' miRNA: 3'- cAGC-GUG-GUACUgCUGCGGa---UG-UAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 31245 | 0.68 | 0.638586 |
Target: 5'- aGUCGaACCGUGugcGCGGCGCCgugAUCGg -3' miRNA: 3'- -CAGCgUGGUAC---UGCUGCGGaugUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 4061 | 0.68 | 0.660959 |
Target: 5'- aGUCGU-UCAUGGaaauCGCCUGCGUCGa -3' miRNA: 3'- -CAGCGuGGUACUgcu-GCGGAUGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 16593 | 0.68 | 0.649781 |
Target: 5'- -aCGCugCgGUGGCGugGCCcgacccccucgGCGUCGg -3' miRNA: 3'- caGCGugG-UACUGCugCGGa----------UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 27122 | 0.68 | 0.638586 |
Target: 5'- --gGCGCCAcGGCGGCaccgGCCgGCGUCGa -3' miRNA: 3'- cagCGUGGUaCUGCUG----CGGaUGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 37721 | 0.68 | 0.672109 |
Target: 5'- aUCGCGCUgcGgcGCGGCGCCggcuggucgGCGUCGu -3' miRNA: 3'- cAGCGUGGuaC--UGCUGCGGa--------UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 18739 | 0.68 | 0.649781 |
Target: 5'- -gCGCGCCAUGAgcgcgGACGCgU-CGUCGa -3' miRNA: 3'- caGCGUGGUACUg----CUGCGgAuGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 41786 | 0.68 | 0.694281 |
Target: 5'- aUCGCugCAcucacCGACGCCccggACGUCGa -3' miRNA: 3'- cAGCGugGUacu--GCUGCGGa---UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 10336 | 0.69 | 0.582724 |
Target: 5'- uGUCGuCGCCGUcGACGACGUgaCgguCAUCGa -3' miRNA: 3'- -CAGC-GUGGUA-CUGCUGCG--Gau-GUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 44290 | 0.69 | 0.627385 |
Target: 5'- cGUCGCACUuUGGuacuCGACGUCacACGUCGg -3' miRNA: 3'- -CAGCGUGGuACU----GCUGCGGa-UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 42140 | 0.69 | 0.605006 |
Target: 5'- -cCGCACUcacgGUGGCGACGCUgccUGUCGg -3' miRNA: 3'- caGCGUGG----UACUGCUGCGGau-GUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 27390 | 0.69 | 0.587169 |
Target: 5'- -gCGCGCUGUGcACGAuCGCCUcgacgcagcgguaccGCGUCGa -3' miRNA: 3'- caGCGUGGUAC-UGCU-GCGGA---------------UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 18316 | 0.69 | 0.582724 |
Target: 5'- cGUCGCACUGgucGGCGucaccgGCGCCgUGCAUCu -3' miRNA: 3'- -CAGCGUGGUa--CUGC------UGCGG-AUGUAGc -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 24361 | 0.69 | 0.587169 |
Target: 5'- -cUGCACCAccuugccgaggucgGACGACGCCcGCAcuUCGg -3' miRNA: 3'- caGCGUGGUa-------------CUGCUGCGGaUGU--AGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 39051 | 0.69 | 0.579394 |
Target: 5'- cGUCGCgcaugugccgcucgGCCcggAUGACGAgCGCCUcgacgGCGUCGa -3' miRNA: 3'- -CAGCG--------------UGG---UACUGCU-GCGGA-----UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 45351 | 0.69 | 0.605006 |
Target: 5'- cGUCGCACCgGUGugGAC-CgUGCGgcgCGg -3' miRNA: 3'- -CAGCGUGG-UACugCUGcGgAUGUa--GC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 19404 | 0.69 | 0.605006 |
Target: 5'- cGUCGCGCCGagcucggucGGCuGCGCC-GCGUCGg -3' miRNA: 3'- -CAGCGUGGUa--------CUGcUGCGGaUGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 16107 | 0.69 | 0.593848 |
Target: 5'- cUCGCGCCAUGugagcaGCGGCcgGCCggcgGCGUCc -3' miRNA: 3'- cAGCGUGGUAC------UGCUG--CGGa---UGUAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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