Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26414 | 5' | -53.5 | NC_005345.2 | + | 26047 | 0.67 | 0.748414 |
Target: 5'- cUCGCucGCCucGGCGAgCGCCUGC-UCGa -3' miRNA: 3'- cAGCG--UGGuaCUGCU-GCGGAUGuAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 595 | 0.67 | 0.748414 |
Target: 5'- -cCGCAUCc--GCGACGCCcGCAUCc -3' miRNA: 3'- caGCGUGGuacUGCUGCGGaUGUAGc -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 32786 | 0.67 | 0.727043 |
Target: 5'- cGUCGCgAUCAccGCGGCGCCgGCcgCGa -3' miRNA: 3'- -CAGCG-UGGUacUGCUGCGGaUGuaGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 10044 | 0.67 | 0.727043 |
Target: 5'- uGUCGagacggagaACC--GACGACGCCgACGUCGc -3' miRNA: 3'- -CAGCg--------UGGuaCUGCUGCGGaUGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 45821 | 0.67 | 0.727043 |
Target: 5'- cGUCGCgACCGUGACG-UGCacgGCggCGg -3' miRNA: 3'- -CAGCG-UGGUACUGCuGCGga-UGuaGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 37721 | 0.68 | 0.672109 |
Target: 5'- aUCGCGCUgcGgcGCGGCGCCggcuggucgGCGUCGu -3' miRNA: 3'- cAGCGUGGuaC--UGCUGCGGa--------UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 44978 | 0.67 | 0.70528 |
Target: 5'- -cCGCcCCGUGA--GCGCCUgccGCGUCGa -3' miRNA: 3'- caGCGuGGUACUgcUGCGGA---UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 6705 | 0.67 | 0.716205 |
Target: 5'- aUCGcCGCgCGUGGgGACGCCgaugACgAUCGg -3' miRNA: 3'- cAGC-GUG-GUACUgCUGCGGa---UG-UAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 13234 | 0.67 | 0.716205 |
Target: 5'- uUCGCcgcguccccgaGCCAcccGACGAUGCCgcCGUCGg -3' miRNA: 3'- cAGCG-----------UGGUa--CUGCUGCGGauGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 51 | 0.67 | 0.727043 |
Target: 5'- uGUCGUACCcgGAUgccacauaGAUGCC-ACAUCc -3' miRNA: 3'- -CAGCGUGGuaCUG--------CUGCGGaUGUAGc -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 39906 | 0.67 | 0.727043 |
Target: 5'- -cCGCACCGUGgucGCGGCGUacgaCUugaGCGUCGc -3' miRNA: 3'- caGCGUGGUAC---UGCUGCG----GA---UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 44290 | 0.69 | 0.627385 |
Target: 5'- cGUCGCACUuUGGuacuCGACGUCacACGUCGg -3' miRNA: 3'- -CAGCGUGGuACU----GCUGCGGa-UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 42140 | 0.69 | 0.605006 |
Target: 5'- -cCGCACUcacgGUGGCGACGCUgccUGUCGg -3' miRNA: 3'- caGCGUGG----UACUGCUGCGGau-GUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 27390 | 0.69 | 0.587169 |
Target: 5'- -gCGCGCUGUGcACGAuCGCCUcgacgcagcgguaccGCGUCGa -3' miRNA: 3'- caGCGUGGUAC-UGCU-GCGGA---------------UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 18316 | 0.69 | 0.582724 |
Target: 5'- cGUCGCACUGgucGGCGucaccgGCGCCgUGCAUCu -3' miRNA: 3'- -CAGCGUGGUa--CUGC------UGCGG-AUGUAGc -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 3934 | 0.7 | 0.571642 |
Target: 5'- -cCGCACCcccGUGACcgGGCGUCUguACGUCGa -3' miRNA: 3'- caGCGUGG---UACUG--CUGCGGA--UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 19714 | 0.7 | 0.54964 |
Target: 5'- cUCGaCGCCGagGACGACGCCcGCAaCGc -3' miRNA: 3'- cAGC-GUGGUa-CUGCUGCGGaUGUaGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 30418 | 0.71 | 0.495937 |
Target: 5'- -cCGCGCuCAUGGCG-CGCC-ACAUCc -3' miRNA: 3'- caGCGUG-GUACUGCuGCGGaUGUAGc -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 44153 | 0.73 | 0.387421 |
Target: 5'- cUCGuCACCAUGGCGAgCGCgUucguccGCAUCGg -3' miRNA: 3'- cAGC-GUGGUACUGCU-GCGgA------UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 44441 | 0.66 | 0.79059 |
Target: 5'- uUgGCACCGUGAuCGcCGCCcuguucgccgcacggGCGUCGa -3' miRNA: 3'- cAgCGUGGUACU-GCuGCGGa--------------UGUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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