Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26414 | 5' | -53.5 | NC_005345.2 | + | 11830 | 0.66 | 0.788593 |
Target: 5'- -cCGgACCGUGGgcgagguCGACGCCacggcguggGCAUCGg -3' miRNA: 3'- caGCgUGGUACU-------GCUGCGGa--------UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 4061 | 0.68 | 0.660959 |
Target: 5'- aGUCGU-UCAUGGaaauCGCCUGCGUCGa -3' miRNA: 3'- -CAGCGuGGUACUgcu-GCGGAUGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 16593 | 0.68 | 0.649781 |
Target: 5'- -aCGCugCgGUGGCGugGCCcgacccccucgGCGUCGg -3' miRNA: 3'- caGCGugG-UACUGCugCGGa----------UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 31245 | 0.68 | 0.638586 |
Target: 5'- aGUCGaACCGUGugcGCGGCGCCgugAUCGg -3' miRNA: 3'- -CAGCgUGGUAC---UGCUGCGGaugUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 39168 | 1.09 | 0.001332 |
Target: 5'- uGUCGCACCAUGACGACGCCUACAUCGa -3' miRNA: 3'- -CAGCGUGGUACUGCUGCGGAUGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 44153 | 0.73 | 0.387421 |
Target: 5'- cUCGuCACCAUGGCGAgCGCgUucguccGCAUCGg -3' miRNA: 3'- cAGC-GUGGUACUGCU-GCGgA------UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 30418 | 0.71 | 0.495937 |
Target: 5'- -cCGCGCuCAUGGCG-CGCC-ACAUCc -3' miRNA: 3'- caGCGUG-GUACUGCuGCGGaUGUAGc -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 19714 | 0.7 | 0.54964 |
Target: 5'- cUCGaCGCCGagGACGACGCCcGCAaCGc -3' miRNA: 3'- cAGC-GUGGUa-CUGCUGCGGaUGUaGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 3934 | 0.7 | 0.571642 |
Target: 5'- -cCGCACCcccGUGACcgGGCGUCUguACGUCGa -3' miRNA: 3'- caGCGUGG---UACUG--CUGCGGA--UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 18316 | 0.69 | 0.582724 |
Target: 5'- cGUCGCACUGgucGGCGucaccgGCGCCgUGCAUCu -3' miRNA: 3'- -CAGCGUGGUa--CUGC------UGCGG-AUGUAGc -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 27390 | 0.69 | 0.587169 |
Target: 5'- -gCGCGCUGUGcACGAuCGCCUcgacgcagcgguaccGCGUCGa -3' miRNA: 3'- caGCGUGGUAC-UGCU-GCGGA---------------UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 42140 | 0.69 | 0.605006 |
Target: 5'- -cCGCACUcacgGUGGCGACGCUgccUGUCGg -3' miRNA: 3'- caGCGUGG----UACUGCUGCGGau-GUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 44290 | 0.69 | 0.627385 |
Target: 5'- cGUCGCACUuUGGuacuCGACGUCacACGUCGg -3' miRNA: 3'- -CAGCGUGGuACU----GCUGCGGa-UGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 27122 | 0.68 | 0.638586 |
Target: 5'- --gGCGCCAcGGCGGCaccgGCCgGCGUCGa -3' miRNA: 3'- cagCGUGGUaCUGCUG----CGGaUGUAGC- -5' |
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26414 | 5' | -53.5 | NC_005345.2 | + | 44441 | 0.66 | 0.79059 |
Target: 5'- uUgGCACCGUGAuCGcCGCCcuguucgccgcacggGCGUCGa -3' miRNA: 3'- cAgCGUGGUACU-GCuGCGGa--------------UGUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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