miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26415 3' -64.9 NC_005345.2 + 7499 0.66 0.265395
Target:  5'- gUGGCGggccgccauUCgGUGGGCgugCuGCCGGCgGCg -3'
miRNA:   3'- aGCCGU---------AG-CGCCCGa--GcCGGCCGgCG- -5'
26415 3' -64.9 NC_005345.2 + 18236 0.66 0.259076
Target:  5'- -gGGC-UCGCccuGGucccggugcuGCUC-GCCGGCCGCg -3'
miRNA:   3'- agCCGuAGCG---CC----------CGAGcCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 11268 0.66 0.258451
Target:  5'- -gGGCAcCGCcgcgaccguccGGGCcugagccUC-GCCGGCCGCg -3'
miRNA:   3'- agCCGUaGCG-----------CCCG-------AGcCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 24148 0.66 0.255344
Target:  5'- cUCGGCGaccgcggcgagcaccUCGacgaCGGGCacuugccacUCGaCCGGCCGCc -3'
miRNA:   3'- -AGCCGU---------------AGC----GCCCG---------AGCcGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 12594 0.66 0.252881
Target:  5'- gCGGCcgcgAUCGuCGGcuacgcGCUCGGCCGGgCa- -3'
miRNA:   3'- aGCCG----UAGC-GCC------CGAGCCGGCCgGcg -5'
26415 3' -64.9 NC_005345.2 + 10601 0.66 0.252881
Target:  5'- gUGGCA-CGagcaGcGGCgCGGCCGGUCGg -3'
miRNA:   3'- aGCCGUaGCg---C-CCGaGCCGGCCGGCg -5'
26415 3' -64.9 NC_005345.2 + 20549 0.66 0.252881
Target:  5'- cCGGCAUgCGCGauucGGUgugCGGUCGGUCa- -3'
miRNA:   3'- aGCCGUA-GCGC----CCGa--GCCGGCCGGcg -5'
26415 3' -64.9 NC_005345.2 + 45368 0.66 0.252881
Target:  5'- cCGuGCggCGCGGGUccgcguucaccUCGGCCGuCCaGCg -3'
miRNA:   3'- aGC-CGuaGCGCCCG-----------AGCCGGCcGG-CG- -5'
26415 3' -64.9 NC_005345.2 + 34334 0.66 0.252881
Target:  5'- uUCGGCA-CGCaGGCcgaagaccUCGGC--GCCGCa -3'
miRNA:   3'- -AGCCGUaGCGcCCG--------AGCCGgcCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 28758 0.66 0.252881
Target:  5'- aCGGCGggGCcGGCUCGGUgaCGGUCa- -3'
miRNA:   3'- aGCCGUagCGcCCGAGCCG--GCCGGcg -5'
26415 3' -64.9 NC_005345.2 + 22624 0.66 0.252881
Target:  5'- gCGGUgguUC-CGGcGCUCGuGCCGGgUGCa -3'
miRNA:   3'- aGCCGu--AGcGCC-CGAGC-CGGCCgGCG- -5'
26415 3' -64.9 NC_005345.2 + 13822 0.66 0.252268
Target:  5'- cCGGCcgCGCcgaucgcccGGaaGCUCGGCgcgaggaCGGCCGUc -3'
miRNA:   3'- aGCCGuaGCG---------CC--CGAGCCG-------GCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 37439 0.66 0.246808
Target:  5'- gCGGCG--GCGGcccGCU-GGUCGGCCGUc -3'
miRNA:   3'- aGCCGUagCGCC---CGAgCCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 18815 0.66 0.246808
Target:  5'- aCGGCggCGCGGGCcugguaguccUCGaCCGuugcguacGCCGCc -3'
miRNA:   3'- aGCCGuaGCGCCCG----------AGCcGGC--------CGGCG- -5'
26415 3' -64.9 NC_005345.2 + 30671 0.67 0.243222
Target:  5'- -gGGUAcC-CGGGCaugggucgacgaucCGGCCGGCUGCg -3'
miRNA:   3'- agCCGUaGcGCCCGa-------------GCCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 3585 0.67 0.243222
Target:  5'- gUCGcGCAccUGCGGGUcgUCGGCCcacaggugaccccacGGcCCGCg -3'
miRNA:   3'- -AGC-CGUa-GCGCCCG--AGCCGG---------------CC-GGCG- -5'
26415 3' -64.9 NC_005345.2 + 38467 0.67 0.240856
Target:  5'- -gGGCAcagCGCGGGCacuucCCGcGCCGCg -3'
miRNA:   3'- agCCGUa--GCGCCCGagcc-GGC-CGGCG- -5'
26415 3' -64.9 NC_005345.2 + 38268 0.67 0.240856
Target:  5'- aCGuGCGggUGCGGGCaCGGgaCGcGCCGCg -3'
miRNA:   3'- aGC-CGUa-GCGCCCGaGCCg-GC-CGGCG- -5'
26415 3' -64.9 NC_005345.2 + 9729 0.67 0.240856
Target:  5'- cCGGgGUCgaGCGGG-UCGGCCucgauGCUGCg -3'
miRNA:   3'- aGCCgUAG--CGCCCgAGCCGGc----CGGCG- -5'
26415 3' -64.9 NC_005345.2 + 24634 0.67 0.240856
Target:  5'- aUCcGCcgUGCGGGC-CgGGuuGGUCGCc -3'
miRNA:   3'- -AGcCGuaGCGCCCGaG-CCggCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.