Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26415 | 5' | -54.3 | NC_005345.2 | + | 4775 | 0.68 | 0.625036 |
Target: 5'- uGGGCccgugCCUuuCCGGGcUCGCCGCGg -3' miRNA: 3'- -CCUGua---GGAcuGGCUCaAGCGGUGCa -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 10538 | 0.69 | 0.559054 |
Target: 5'- cGACGUCgaGAucgccguguCCGAGgcgcUCGCCACGa -3' miRNA: 3'- cCUGUAGgaCU---------GGCUCa---AGCGGUGCa -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 17251 | 0.7 | 0.516131 |
Target: 5'- -cGCGUCC-GACCGGGcggcaggCGCCGCGg -3' miRNA: 3'- ccUGUAGGaCUGGCUCaa-----GCGGUGCa -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 7054 | 0.7 | 0.516131 |
Target: 5'- cGGuCGUCCUu-UCGAGggUGCCGCGUa -3' miRNA: 3'- -CCuGUAGGAcuGGCUCaaGCGGUGCA- -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 29991 | 0.7 | 0.491019 |
Target: 5'- cGGCGUCCUcGGCCGGGguccggguggcgCGCCAUGc -3' miRNA: 3'- cCUGUAGGA-CUGGCUCaa----------GCGGUGCa -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 5624 | 0.72 | 0.404396 |
Target: 5'- cGGCgAUCCgcuccgcgagcGCCGGGUUCGCCGCGa -3' miRNA: 3'- cCUG-UAGGac---------UGGCUCAAGCGGUGCa -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 30010 | 0.78 | 0.190465 |
Target: 5'- cGACGUCCcGGCCGAGgUCGCCgaGCGg -3' miRNA: 3'- cCUGUAGGaCUGGCUCaAGCGG--UGCa -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 39867 | 1.1 | 0.000995 |
Target: 5'- aGGACAUCCUGACCGAGUUCGCCACGUg -3' miRNA: 3'- -CCUGUAGGACUGGCUCAAGCGGUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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