miRNA display CGI


Results 21 - 40 of 219 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26416 3' -59.2 NC_005345.2 + 15752 0.66 0.52149
Target:  5'- -cCGACGcCGACcUCGACcGCGGCUg -3'
miRNA:   3'- uaGCUGCcGCUGcAGCUGcUGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 27138 0.66 0.52149
Target:  5'- -cCGGCGGgcccggcaugcCGcCGUgCGGCaGCGGCCCg -3'
miRNA:   3'- uaGCUGCC-----------GCuGCA-GCUGcUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 23290 0.66 0.52149
Target:  5'- gAUCaGCGGCGACGgcCGGCcguuguccuCGGUCCg -3'
miRNA:   3'- -UAGcUGCCGCUGCa-GCUGcu-------GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 7115 0.66 0.515386
Target:  5'- -gCGACGuGUGGCGcCGcGCGAaccgggcggggcacgUGGCCCg -3'
miRNA:   3'- uaGCUGC-CGCUGCaGC-UGCU---------------GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 15627 0.66 0.511333
Target:  5'- gGUCGGUGGUGACacaccgGUCGgggccgcaauGCGACcgGGCCCg -3'
miRNA:   3'- -UAGCUGCCGCUG------CAGC----------UGCUG--CCGGG- -5'
26416 3' -59.2 NC_005345.2 + 31177 0.66 0.511333
Target:  5'- gAUCGA-GGCcGCGgccCGGCaGGCGGCCg -3'
miRNA:   3'- -UAGCUgCCGcUGCa--GCUG-CUGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 37720 0.66 0.511333
Target:  5'- gAUCGcGCuGCGGCG-CGGCGcCGGCUg -3'
miRNA:   3'- -UAGC-UGcCGCUGCaGCUGCuGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 10853 0.66 0.511333
Target:  5'- -cCGcCGGCGAgGUaguaGuCGACGGgCCa -3'
miRNA:   3'- uaGCuGCCGCUgCAg---CuGCUGCCgGG- -5'
26416 3' -59.2 NC_005345.2 + 30457 0.66 0.511333
Target:  5'- -cCGACcGCGAUcaggaaGaCGACGACGGCaCCc -3'
miRNA:   3'- uaGCUGcCGCUG------CaGCUGCUGCCG-GG- -5'
26416 3' -59.2 NC_005345.2 + 34363 0.66 0.510322
Target:  5'- cGUCGAagcgcacCGG-GGCGUUGcaguCGACGaGCCCg -3'
miRNA:   3'- -UAGCU-------GCCgCUGCAGCu---GCUGC-CGGG- -5'
26416 3' -59.2 NC_005345.2 + 28100 0.66 0.501259
Target:  5'- gAUCGACgaGGCGGuCGcCGGCGcGCGuGCCg -3'
miRNA:   3'- -UAGCUG--CCGCU-GCaGCUGC-UGC-CGGg -5'
26416 3' -59.2 NC_005345.2 + 18499 0.66 0.501259
Target:  5'- uUCGGCaaaGGCGcuGCGcUCGGCGuccuCGGCgCCa -3'
miRNA:   3'- uAGCUG---CCGC--UGC-AGCUGCu---GCCG-GG- -5'
26416 3' -59.2 NC_005345.2 + 4851 0.66 0.501258
Target:  5'- -cCGACGuGUGACGUCGaguaccaaaguGCGACGaagauGCCg -3'
miRNA:   3'- uaGCUGC-CGCUGCAGC-----------UGCUGC-----CGGg -5'
26416 3' -59.2 NC_005345.2 + 31028 0.66 0.501258
Target:  5'- -aCGACGGCGcCGgcgagugCGGCGACGaucuUCCa -3'
miRNA:   3'- uaGCUGCCGCuGCa------GCUGCUGCc---GGG- -5'
26416 3' -59.2 NC_005345.2 + 25140 0.66 0.501258
Target:  5'- cUCGGCGaGCGcgaucGCGcCGACGaACGGCg- -3'
miRNA:   3'- uAGCUGC-CGC-----UGCaGCUGC-UGCCGgg -5'
26416 3' -59.2 NC_005345.2 + 7513 0.66 0.501258
Target:  5'- uUCgGugGGCGugcUGcCGGCGGCGGUCg -3'
miRNA:   3'- uAG-CugCCGCu--GCaGCUGCUGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 33847 0.66 0.495256
Target:  5'- aGUCGGCgacgaaccucgccgaGGCGuucgGCGUCGACGugGGggacgCCg -3'
miRNA:   3'- -UAGCUG---------------CCGC----UGCAGCUGCugCCg----GG- -5'
26416 3' -59.2 NC_005345.2 + 11595 0.66 0.491273
Target:  5'- cUCG-CGGUGGCGUgG--GGCGGCCg -3'
miRNA:   3'- uAGCuGCCGCUGCAgCugCUGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 10101 0.66 0.491273
Target:  5'- -cCGAgCGGCacauGCG-CGACGACuGCCCc -3'
miRNA:   3'- uaGCU-GCCGc---UGCaGCUGCUGcCGGG- -5'
26416 3' -59.2 NC_005345.2 + 10606 0.66 0.491273
Target:  5'- -aCGAgCaGCGGCG-CGGcCGGuCGGCCCg -3'
miRNA:   3'- uaGCU-GcCGCUGCaGCU-GCU-GCCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.