miRNA display CGI


Results 21 - 40 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26417 5' -58.1 NC_005345.2 + 24985 0.66 0.572618
Target:  5'- cCCCGcgccauuucgagGAGCGGGAuccaUGUGUuaucGGuCUGCGCCu -3'
miRNA:   3'- -GGGC------------UUUGCCCU----ACGCG----CU-GGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 948 0.66 0.572618
Target:  5'- gCCGGguugAACGGGAUaCGcCGGCCGUccuugacggcgGCCc -3'
miRNA:   3'- gGGCU----UUGCCCUAcGC-GCUGGCG-----------CGG- -5'
26417 5' -58.1 NC_005345.2 + 24265 0.66 0.572618
Target:  5'- gUCCGAcaGGCGGcagccGAUcaGCGCGGUCGCGUCc -3'
miRNA:   3'- -GGGCU--UUGCC-----CUA--CGCGCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 3338 0.66 0.572618
Target:  5'- aCUCGGGcuGCGGGcgccGCGUucGAUCGCGCg -3'
miRNA:   3'- -GGGCUU--UGCCCua--CGCG--CUGGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 21287 0.66 0.572618
Target:  5'- cCCCGucguCGGGG-GCGCcGCCGaggaucgGCCa -3'
miRNA:   3'- -GGGCuuu-GCCCUaCGCGcUGGCg------CGG- -5'
26417 5' -58.1 NC_005345.2 + 37244 0.66 0.572618
Target:  5'- gCCGuaguAGCGGGcgacgGCgGCGGUCGCGUCg -3'
miRNA:   3'- gGGCu---UUGCCCua---CG-CGCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 10283 0.66 0.572618
Target:  5'- cCCCGAGgagaugcggcGCGGGcUGUGgGAgCG-GCCc -3'
miRNA:   3'- -GGGCUU----------UGCCCuACGCgCUgGCgCGG- -5'
26417 5' -58.1 NC_005345.2 + 39369 0.66 0.572618
Target:  5'- -aCGAGAuCGaGAUGCGCGAUgcCGCCg -3'
miRNA:   3'- ggGCUUU-GCcCUACGCGCUGgcGCGG- -5'
26417 5' -58.1 NC_005345.2 + 24495 0.66 0.572618
Target:  5'- uCCCGGGcccGCGGGAuccUG-GuCGACCaccgcgagGCGCCc -3'
miRNA:   3'- -GGGCUU---UGCCCU---ACgC-GCUGG--------CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 46079 0.66 0.572618
Target:  5'- gCCGggGCcgccGGGGccUGCGCGGacauccaCGCGgCg -3'
miRNA:   3'- gGGCuuUG----CCCU--ACGCGCUg------GCGCgG- -5'
26417 5' -58.1 NC_005345.2 + 15339 0.66 0.572618
Target:  5'- gCCGggGCGuagcGGGUGUGCGGCgaaguagGCGgCg -3'
miRNA:   3'- gGGCuuUGC----CCUACGCGCUGg------CGCgG- -5'
26417 5' -58.1 NC_005345.2 + 31358 0.66 0.572618
Target:  5'- aUCCGGcuCGGGGUGaucggGCGAUCG-GUCa -3'
miRNA:   3'- -GGGCUuuGCCCUACg----CGCUGGCgCGG- -5'
26417 5' -58.1 NC_005345.2 + 24168 0.66 0.572618
Target:  5'- cCUCGAcGACGGGcacuUGCcacuCGACCG-GCCg -3'
miRNA:   3'- -GGGCU-UUGCCCu---ACGc---GCUGGCgCGG- -5'
26417 5' -58.1 NC_005345.2 + 10508 0.66 0.571564
Target:  5'- cCUCGAcgggcagGACGGGAU-CGCcgaGGCCGaCGUCg -3'
miRNA:   3'- -GGGCU-------UUGCCCUAcGCG---CUGGC-GCGG- -5'
26417 5' -58.1 NC_005345.2 + 19958 0.66 0.562095
Target:  5'- cCCCGAAG-GGGcUGCGCaagagcaugccGACCcgguuCGCCg -3'
miRNA:   3'- -GGGCUUUgCCCuACGCG-----------CUGGc----GCGG- -5'
26417 5' -58.1 NC_005345.2 + 30135 0.66 0.562095
Target:  5'- gCCCGA---GGGcgGCGCGccACC-CGUCg -3'
miRNA:   3'- -GGGCUuugCCCuaCGCGC--UGGcGCGG- -5'
26417 5' -58.1 NC_005345.2 + 9154 0.66 0.561046
Target:  5'- aCCCGAGacACGGGcGUGUaggacucgGCGAgcguggcgaggaaUCGCGCUg -3'
miRNA:   3'- -GGGCUU--UGCCC-UACG--------CGCU-------------GGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 13982 0.66 0.561046
Target:  5'- aCCCGGGACGccccaacGcgGUGUGAUcacccuaCGCGCCa -3'
miRNA:   3'- -GGGCUUUGCc------CuaCGCGCUG-------GCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 48928 0.66 0.558948
Target:  5'- aCCGAGgguguucgaacgcuGCGGGcgGUGUGacGCCGgaUGCCa -3'
miRNA:   3'- gGGCUU--------------UGCCCuaCGCGC--UGGC--GCGG- -5'
26417 5' -58.1 NC_005345.2 + 31189 0.66 0.551625
Target:  5'- aCUCGGgcgcGGCGGG-UGCgGCGGgUGCGCa -3'
miRNA:   3'- -GGGCU----UUGCCCuACG-CGCUgGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.