miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26418 3' -56.5 NC_005345.2 + 33892 0.69 0.424578
Target:  5'- -aCG-CCGCUc-GCGCGGCCGGGCa- -3'
miRNA:   3'- caGCaGGCGAcaUGUGCUGGUCCGac -5'
26418 3' -56.5 NC_005345.2 + 41077 1.07 0.000848
Target:  5'- uGUCGUCCGCUGUACACGACCAGGCUGu -3'
miRNA:   3'- -CAGCAGGCGACAUGUGCUGGUCCGAC- -5'
26418 3' -56.5 NC_005345.2 + 3825 0.74 0.199649
Target:  5'- gGUCGUCCGCUgcgaggucggcggcGUGCG-GACCcGGCUGa -3'
miRNA:   3'- -CAGCAGGCGA--------------CAUGUgCUGGuCCGAC- -5'
26418 3' -56.5 NC_005345.2 + 32226 0.74 0.212279
Target:  5'- cUCGUCCGCgGUGacCGCGACCGGGg-- -3'
miRNA:   3'- cAGCAGGCGaCAU--GUGCUGGUCCgac -5'
26418 3' -56.5 NC_005345.2 + 5198 0.74 0.223815
Target:  5'- --gGUCCGCcccgGCACGGCCGGGCa- -3'
miRNA:   3'- cagCAGGCGaca-UGUGCUGGUCCGac -5'
26418 3' -56.5 NC_005345.2 + 9802 0.73 0.261641
Target:  5'- uUCG-CCGCUGUGuCGCGGCCGGuGCc- -3'
miRNA:   3'- cAGCaGGCGACAU-GUGCUGGUC-CGac -5'
26418 3' -56.5 NC_005345.2 + 46782 0.72 0.289647
Target:  5'- --gGcCCGCgagGU-CGCGACCGGGCUGc -3'
miRNA:   3'- cagCaGGCGa--CAuGUGCUGGUCCGAC- -5'
26418 3' -56.5 NC_005345.2 + 23965 0.7 0.369741
Target:  5'- -gCGggCUGCUGU-CGCGGCCgcgAGGCUGg -3'
miRNA:   3'- caGCa-GGCGACAuGUGCUGG---UCCGAC- -5'
26418 3' -56.5 NC_005345.2 + 24631 0.7 0.39655
Target:  5'- -aCGaUCCGCcGUGCG-GGCCGGGUUGg -3'
miRNA:   3'- caGC-AGGCGaCAUGUgCUGGUCCGAC- -5'
26418 3' -56.5 NC_005345.2 + 15984 0.66 0.601587
Target:  5'- gGUCGUCCGUaccucUGUGgGCGACguG-CUGc -3'
miRNA:   3'- -CAGCAGGCG-----ACAUgUGCUGguCcGAC- -5'
26418 3' -56.5 NC_005345.2 + 14753 0.66 0.601587
Target:  5'- -gUGUCgGUgacGUGCuCGACCGGGCUc -3'
miRNA:   3'- caGCAGgCGa--CAUGuGCUGGUCCGAc -5'
26418 3' -56.5 NC_005345.2 + 45940 0.68 0.463722
Target:  5'- -cUGUCCGCUGU-CAUcGCCGGGUa- -3'
miRNA:   3'- caGCAGGCGACAuGUGcUGGUCCGac -5'
26418 3' -56.5 NC_005345.2 + 21995 0.66 0.62252
Target:  5'- cUCGggCCGCUGccGCACGgcggcauGCCGGGCc- -3'
miRNA:   3'- cAGCa-GGCGACa-UGUGC-------UGGUCCGac -5'
26418 3' -56.5 NC_005345.2 + 9283 0.68 0.504673
Target:  5'- uGUCGgCCGCggcGUACcucGCGGCCGGcGUUGa -3'
miRNA:   3'- -CAGCaGGCGa--CAUG---UGCUGGUC-CGAC- -5'
26418 3' -56.5 NC_005345.2 + 26929 0.66 0.579655
Target:  5'- -aCGaCgCGCUGUcggguugcuGCGCGACC-GGCUGa -3'
miRNA:   3'- caGCaG-GCGACA---------UGUGCUGGuCCGAC- -5'
26418 3' -56.5 NC_005345.2 + 12603 0.66 0.623623
Target:  5'- aUCGUCgGCU--ACGCGcucgGCCGGGCa- -3'
miRNA:   3'- cAGCAGgCGAcaUGUGC----UGGUCCGac -5'
26418 3' -56.5 NC_005345.2 + 48325 0.68 0.504673
Target:  5'- cUCGUCCGCggUGUG-ACGGCCcccGGGCg- -3'
miRNA:   3'- cAGCAGGCG--ACAUgUGCUGG---UCCGac -5'
26418 3' -56.5 NC_005345.2 + 15645 0.67 0.547105
Target:  5'- gGUCGgggCCGCa--AUGCGACCGGGCc- -3'
miRNA:   3'- -CAGCa--GGCGacaUGUGCUGGUCCGac -5'
26418 3' -56.5 NC_005345.2 + 8072 0.69 0.415104
Target:  5'- cUCG-CCGCcGaGCagGCGGCCGGGCUGc -3'
miRNA:   3'- cAGCaGGCGaCaUG--UGCUGGUCCGAC- -5'
26418 3' -56.5 NC_005345.2 + 25293 0.67 0.547105
Target:  5'- cUCG-CCGUcGUcC-CGGCCGGGCUGg -3'
miRNA:   3'- cAGCaGGCGaCAuGuGCUGGUCCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.