Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26418 | 3' | -56.5 | NC_005345.2 | + | 33892 | 0.69 | 0.424578 |
Target: 5'- -aCG-CCGCUc-GCGCGGCCGGGCa- -3' miRNA: 3'- caGCaGGCGAcaUGUGCUGGUCCGac -5' |
|||||||
26418 | 3' | -56.5 | NC_005345.2 | + | 8072 | 0.69 | 0.415104 |
Target: 5'- cUCG-CCGCcGaGCagGCGGCCGGGCUGc -3' miRNA: 3'- cAGCaGGCGaCaUG--UGCUGGUCCGAC- -5' |
|||||||
26418 | 3' | -56.5 | NC_005345.2 | + | 26591 | 0.69 | 0.415104 |
Target: 5'- aUCGUCuCGUUcacGUACGCGcGCCAuGGCUGu -3' miRNA: 3'- cAGCAG-GCGA---CAUGUGC-UGGU-CCGAC- -5' |
|||||||
26418 | 3' | -56.5 | NC_005345.2 | + | 24631 | 0.7 | 0.39655 |
Target: 5'- -aCGaUCCGCcGUGCG-GGCCGGGUUGg -3' miRNA: 3'- caGC-AGGCGaCAUGUgCUGGUCCGAC- -5' |
|||||||
26418 | 3' | -56.5 | NC_005345.2 | + | 23965 | 0.7 | 0.369741 |
Target: 5'- -gCGggCUGCUGU-CGCGGCCgcgAGGCUGg -3' miRNA: 3'- caGCa-GGCGACAuGUGCUGG---UCCGAC- -5' |
|||||||
26418 | 3' | -56.5 | NC_005345.2 | + | 46782 | 0.72 | 0.289647 |
Target: 5'- --gGcCCGCgagGU-CGCGACCGGGCUGc -3' miRNA: 3'- cagCaGGCGa--CAuGUGCUGGUCCGAC- -5' |
|||||||
26418 | 3' | -56.5 | NC_005345.2 | + | 9802 | 0.73 | 0.261641 |
Target: 5'- uUCG-CCGCUGUGuCGCGGCCGGuGCc- -3' miRNA: 3'- cAGCaGGCGACAU-GUGCUGGUC-CGac -5' |
|||||||
26418 | 3' | -56.5 | NC_005345.2 | + | 5198 | 0.74 | 0.223815 |
Target: 5'- --gGUCCGCcccgGCACGGCCGGGCa- -3' miRNA: 3'- cagCAGGCGaca-UGUGCUGGUCCGac -5' |
|||||||
26418 | 3' | -56.5 | NC_005345.2 | + | 32226 | 0.74 | 0.212279 |
Target: 5'- cUCGUCCGCgGUGacCGCGACCGGGg-- -3' miRNA: 3'- cAGCAGGCGaCAU--GUGCUGGUCCgac -5' |
|||||||
26418 | 3' | -56.5 | NC_005345.2 | + | 3825 | 0.74 | 0.199649 |
Target: 5'- gGUCGUCCGCUgcgaggucggcggcGUGCG-GACCcGGCUGa -3' miRNA: 3'- -CAGCAGGCGA--------------CAUGUgCUGGuCCGAC- -5' |
|||||||
26418 | 3' | -56.5 | NC_005345.2 | + | 41077 | 1.07 | 0.000848 |
Target: 5'- uGUCGUCCGCUGUACACGACCAGGCUGu -3' miRNA: 3'- -CAGCAGGCGACAUGUGCUGGUCCGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home