miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26418 5' -63.4 NC_005345.2 + 12518 0.67 0.270341
Target:  5'- aCGCGggugaucucGCGCaGCUCGCGGaGCGGGcGCa- -3'
miRNA:   3'- -GCGU---------CGUG-CGGGCGCCaUGCCC-CGag -5'
26418 5' -63.4 NC_005345.2 + 37487 0.67 0.270341
Target:  5'- aGCGGUACGacguuCCCGcCGG-GCGcGGGCUg -3'
miRNA:   3'- gCGUCGUGC-----GGGC-GCCaUGC-CCCGAg -5'
26418 5' -63.4 NC_005345.2 + 10785 0.67 0.270341
Target:  5'- aGaCAGC-CGCgCUGCGGcagGCGGaccGGCUCg -3'
miRNA:   3'- gC-GUCGuGCG-GGCGCCa--UGCC---CCGAG- -5'
26418 5' -63.4 NC_005345.2 + 28730 0.67 0.263815
Target:  5'- gGCAGguacgGCGCCCacgGCGGgagguacgGCGGGGC-Cg -3'
miRNA:   3'- gCGUCg----UGCGGG---CGCCa-------UGCCCCGaG- -5'
26418 5' -63.4 NC_005345.2 + 4259 0.67 0.263815
Target:  5'- uGCucGGCGaacaCCgGCGGUGCGGGcaGCUCg -3'
miRNA:   3'- gCG--UCGUgc--GGgCGCCAUGCCC--CGAG- -5'
26418 5' -63.4 NC_005345.2 + 17384 0.67 0.257417
Target:  5'- uCGguGC-CGUCCGCGGUGgucCGcGGGUa- -3'
miRNA:   3'- -GCguCGuGCGGGCGCCAU---GC-CCCGag -5'
26418 5' -63.4 NC_005345.2 + 22677 0.67 0.257417
Target:  5'- gGCAGU-CGCUCgucgugGCGGUgaaGCGGGGCg- -3'
miRNA:   3'- gCGUCGuGCGGG------CGCCA---UGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 29261 0.67 0.251147
Target:  5'- aGCGGCuCGCCCGCaacaucGGcGCGcGGUUCg -3'
miRNA:   3'- gCGUCGuGCGGGCG------CCaUGCcCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 39477 0.67 0.251147
Target:  5'- uGCAGCcggcgGCGCUCGCGGUACGucaGCcCg -3'
miRNA:   3'- gCGUCG-----UGCGGGCGCCAUGCcc-CGaG- -5'
26418 5' -63.4 NC_005345.2 + 22911 0.67 0.251147
Target:  5'- cCGCAGCGCGUcaUCGuCGGcAUGGacuacGGCUCg -3'
miRNA:   3'- -GCGUCGUGCG--GGC-GCCaUGCC-----CCGAG- -5'
26418 5' -63.4 NC_005345.2 + 37776 0.67 0.245004
Target:  5'- cCGCAG-GCGgCCGCGac-CGGGGCUg -3'
miRNA:   3'- -GCGUCgUGCgGGCGCcauGCCCCGAg -5'
26418 5' -63.4 NC_005345.2 + 31288 0.67 0.245004
Target:  5'- gGguGCGCGCCaCGgGGggaugucgcCGGGGCcCg -3'
miRNA:   3'- gCguCGUGCGG-GCgCCau-------GCCCCGaG- -5'
26418 5' -63.4 NC_005345.2 + 9344 0.67 0.245004
Target:  5'- gGuCGGCAUGUCCaCGGUGaucaGGGGCa- -3'
miRNA:   3'- gC-GUCGUGCGGGcGCCAUg---CCCCGag -5'
26418 5' -63.4 NC_005345.2 + 43917 0.67 0.241378
Target:  5'- gCGCAGCGCGUcggcgaucaggccggCCGCGagcugcccggccGUGcCGGGGCg- -3'
miRNA:   3'- -GCGUCGUGCG---------------GGCGC------------CAU-GCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 17591 0.67 0.238985
Target:  5'- uCGCcGCcaucUGCCCGCGGcccaaGGGGCUg -3'
miRNA:   3'- -GCGuCGu---GCGGGCGCCaug--CCCCGAg -5'
26418 5' -63.4 NC_005345.2 + 13664 0.67 0.233091
Target:  5'- aGCAGCGCGCCgcccucgaCGCcGU-CGGGcaGCUCg -3'
miRNA:   3'- gCGUCGUGCGG--------GCGcCAuGCCC--CGAG- -5'
26418 5' -63.4 NC_005345.2 + 34238 0.68 0.22732
Target:  5'- gGCGGCACGgCCGCGaacGCGGucCUCg -3'
miRNA:   3'- gCGUCGUGCgGGCGCca-UGCCccGAG- -5'
26418 5' -63.4 NC_005345.2 + 11650 0.68 0.22167
Target:  5'- aCGCcuGCACGgCgGCGGUAgcggccaacuuCGGGGCg- -3'
miRNA:   3'- -GCGu-CGUGCgGgCGCCAU-----------GCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 20192 0.68 0.218338
Target:  5'- gCGCAGCGC-CUCGCGGauaaggcccgucagcUGCGucGGCUCg -3'
miRNA:   3'- -GCGUCGUGcGGGCGCC---------------AUGCc-CCGAG- -5'
26418 5' -63.4 NC_005345.2 + 5232 0.68 0.21614
Target:  5'- cCGuCGGggUGCCCGCGGUACacgguGGGCg- -3'
miRNA:   3'- -GC-GUCguGCGGGCGCCAUGc----CCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.