miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26419 3' -65 NC_005345.2 + 21751 0.69 0.164642
Target:  5'- cCGGGAgggCCCCugugcuGCUCGCUGGCgggCGAg- -3'
miRNA:   3'- -GCCCUa--GGGG------CGGGCGGCCGa--GCUga -5'
26419 3' -65 NC_005345.2 + 22139 0.67 0.222755
Target:  5'- uCGaGGAacucgaccgcgUCCgCGuCCCGCaGGCUCGACa -3'
miRNA:   3'- -GC-CCU-----------AGGgGC-GGGCGgCCGAGCUGa -5'
26419 3' -65 NC_005345.2 + 23000 0.69 0.164221
Target:  5'- uCGGGGUCCUCGCCgagGUCGGgcauccgggcgaaCUCGACc -3'
miRNA:   3'- -GCCCUAGGGGCGGg--CGGCC-------------GAGCUGa -5'
26419 3' -65 NC_005345.2 + 25354 0.66 0.266713
Target:  5'- ---uGUCgCCGCCguccuggcguggcagUGCCGGCUCGACg -3'
miRNA:   3'- gcccUAGgGGCGG---------------GCGGCCGAGCUGa -5'
26419 3' -65 NC_005345.2 + 25475 0.66 0.277095
Target:  5'- uCGG----CCCGCCCGaCCGGCcgCGACc -3'
miRNA:   3'- -GCCcuagGGGCGGGC-GGCCGa-GCUGa -5'
26419 3' -65 NC_005345.2 + 28167 0.66 0.283076
Target:  5'- uCGGcGuUCCUCGCCgCgGCCaaggggcGGCUCGACa -3'
miRNA:   3'- -GCC-CuAGGGGCGG-G-CGG-------CCGAGCUGa -5'
26419 3' -65 NC_005345.2 + 31634 0.72 0.094924
Target:  5'- --cGGUCCUCGCCCgGCCGGCgacCGGCg -3'
miRNA:   3'- gccCUAGGGGCGGG-CGGCCGa--GCUGa -5'
26419 3' -65 NC_005345.2 + 31849 0.66 0.245699
Target:  5'- aCGGGu---UCGCCCGuCCGGC-CGACa -3'
miRNA:   3'- -GCCCuaggGGCGGGC-GGCCGaGCUGa -5'
26419 3' -65 NC_005345.2 + 33026 0.7 0.141007
Target:  5'- cCGGGA-CgCCGCCgGCCGGC-CG-CUg -3'
miRNA:   3'- -GCCCUaGgGGCGGgCGGCCGaGCuGA- -5'
26419 3' -65 NC_005345.2 + 34329 0.71 0.110755
Target:  5'- uCGGGcgucgaccacaCCCgCGCCCGCCG-CUCGACg -3'
miRNA:   3'- -GCCCua---------GGG-GCGGGCGGCcGAGCUGa -5'
26419 3' -65 NC_005345.2 + 37480 0.67 0.222205
Target:  5'- gCGGGcgagcgguacgacGUUCCCGCCgggCGCgGGCUgCGGCg -3'
miRNA:   3'- -GCCC-------------UAGGGGCGG---GCGgCCGA-GCUGa -5'
26419 3' -65 NC_005345.2 + 38284 0.69 0.168481
Target:  5'- aCGGGAcgcgCCgcgugcggcaguCCGCCCaccgcagcucggcGCCGGCUCGugUc -3'
miRNA:   3'- -GCCCUa---GG------------GGCGGG-------------CGGCCGAGCugA- -5'
26419 3' -65 NC_005345.2 + 39413 0.68 0.182321
Target:  5'- cCGGGAgcgucggcgcggUCgCgGCCCGCgCGGCgCGGCUc -3'
miRNA:   3'- -GCCCU------------AGgGgCGGGCG-GCCGaGCUGA- -5'
26419 3' -65 NC_005345.2 + 41200 1.07 0.000185
Target:  5'- aCGGGAUCCCCGCCCGCCGGCUCGACUu -3'
miRNA:   3'- -GCCCUAGGGGCGGGCGGCCGAGCUGA- -5'
26419 3' -65 NC_005345.2 + 42032 0.66 0.251124
Target:  5'- gGGGAUacgucCCCCGCaCCGgcagcccgaguuaCCGGCugcUCGGCg -3'
miRNA:   3'- gCCCUA-----GGGGCG-GGC-------------GGCCG---AGCUGa -5'
26419 3' -65 NC_005345.2 + 42107 0.66 0.251733
Target:  5'- cCGGGccgCCUCGaUCGCCGGCcggUCGACc -3'
miRNA:   3'- -GCCCua-GGGGCgGGCGGCCG---AGCUGa -5'
26419 3' -65 NC_005345.2 + 42491 0.66 0.245699
Target:  5'- aGGaGAUCgCCacguuCGCCCGUgcccucuccgcgCGGCUCGGCa -3'
miRNA:   3'- gCC-CUAG-GG-----GCGGGCG------------GCCGAGCUGa -5'
26419 3' -65 NC_005345.2 + 44795 0.68 0.196664
Target:  5'- gCGGcccgCCCGCCCGaggcaggaccCCGGCUCGGCc -3'
miRNA:   3'- -GCCcuagGGGCGGGC----------GGCCGAGCUGa -5'
26419 3' -65 NC_005345.2 + 45054 0.72 0.09242
Target:  5'- gGGGuGUgCCCGUcgugcucgaCCGUCGGCUCGACg -3'
miRNA:   3'- gCCC-UAgGGGCG---------GGCGGCCGAGCUGa -5'
26419 3' -65 NC_005345.2 + 48375 0.66 0.257889
Target:  5'- uCGGcAUCCCC-CgCCGCCGGCcggGGCUa -3'
miRNA:   3'- -GCCcUAGGGGcG-GGCGGCCGag-CUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.