miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26420 3' -53.5 NC_005345.2 + 35892 0.67 0.744863
Target:  5'- gCGGuUCGCcgacGGCGGCaucGUCGGGUGgCu -3'
miRNA:   3'- gGCUuAGUGa---CCGCCG---CAGCCUAUgG- -5'
26420 3' -53.5 NC_005345.2 + 31405 0.67 0.765511
Target:  5'- gCCGuccuGGUCGCUcGG-GGCGUCacGGUGCCu -3'
miRNA:   3'- -GGC----UUAGUGA-CCgCCGCAGc-CUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 35321 0.67 0.744863
Target:  5'- cCCGggUUGCggGGCGGacgcuGUCGacGUACCu -3'
miRNA:   3'- -GGCuuAGUGa-CCGCCg----CAGCc-UAUGG- -5'
26420 3' -53.5 NC_005345.2 + 3233 0.67 0.765511
Target:  5'- uUCGGGcagcgCACUGugcacGCGGCGcUCGG-UGCCg -3'
miRNA:   3'- -GGCUUa----GUGAC-----CGCCGC-AGCCuAUGG- -5'
26420 3' -53.5 NC_005345.2 + 35005 0.67 0.765511
Target:  5'- gCCGGggCGCUgcGGCGGCcacGUgGGGgcgggACCg -3'
miRNA:   3'- -GGCUuaGUGA--CCGCCG---CAgCCUa----UGG- -5'
26420 3' -53.5 NC_005345.2 + 30295 0.67 0.761423
Target:  5'- gCCGAAggaguagccCGgUGGCGGCGUacgcaacggucgaGGAcUACCa -3'
miRNA:   3'- -GGCUUa--------GUgACCGCCGCAg------------CCU-AUGG- -5'
26420 3' -53.5 NC_005345.2 + 16061 0.67 0.775635
Target:  5'- uCCGggUC-CgGGCGGUGcgUGGcagcUGCCg -3'
miRNA:   3'- -GGCuuAGuGaCCGCCGCa-GCCu---AUGG- -5'
26420 3' -53.5 NC_005345.2 + 3455 0.67 0.775635
Target:  5'- cCCGAGcUCGCgcgGGC--UGUCGGAcaUGCCu -3'
miRNA:   3'- -GGCUU-AGUGa--CCGccGCAGCCU--AUGG- -5'
26420 3' -53.5 NC_005345.2 + 40424 0.67 0.785609
Target:  5'- aCGGAUCGCcGcCGGCGaCGGAcgagucgGCCa -3'
miRNA:   3'- gGCUUAGUGaCcGCCGCaGCCUa------UGG- -5'
26420 3' -53.5 NC_005345.2 + 3128 0.67 0.764491
Target:  5'- gCCGAGgcgcCACUGcacagccgugccGaCGGCGUCGGcgagcucgucgggGUGCCg -3'
miRNA:   3'- -GGCUUa---GUGAC------------C-GCCGCAGCC-------------UAUGG- -5'
26420 3' -53.5 NC_005345.2 + 8719 0.68 0.693613
Target:  5'- gCCGAcucguccGUCGCcGGCGGCGauccguacggacgcgUCGGcgguguggcuggcGUGCCa -3'
miRNA:   3'- -GGCU-------UAGUGaCCGCCGC---------------AGCC-------------UAUGG- -5'
26420 3' -53.5 NC_005345.2 + 40240 0.68 0.723757
Target:  5'- gCCGuGAUC-CUGGCGaGCGgggaCGGGgcGCCg -3'
miRNA:   3'- -GGC-UUAGuGACCGC-CGCa---GCCUa-UGG- -5'
26420 3' -53.5 NC_005345.2 + 13043 0.68 0.691439
Target:  5'- aCCGGAUCACcGGCaGCGgcaucgugUGGAccggACCc -3'
miRNA:   3'- -GGCUUAGUGaCCGcCGCa-------GCCUa---UGG- -5'
26420 3' -53.5 NC_005345.2 + 31929 0.68 0.734361
Target:  5'- gUCGAGUaaaGCUcGGCGG-GUgCGGGUGCg -3'
miRNA:   3'- -GGCUUAg--UGA-CCGCCgCA-GCCUAUGg -5'
26420 3' -53.5 NC_005345.2 + 31230 0.68 0.734361
Target:  5'- gCCGggUgUACggcgGGUccGGgGUCGGGUGCg -3'
miRNA:   3'- -GGCuuA-GUGa---CCG--CCgCAGCCUAUGg -5'
26420 3' -53.5 NC_005345.2 + 18500 0.68 0.726948
Target:  5'- cCCGggUCGaggucgagcgaguacGCGGCGUCGGcguCCg -3'
miRNA:   3'- -GGCuuAGUgac------------CGCCGCAGCCuauGG- -5'
26420 3' -53.5 NC_005345.2 + 34733 0.69 0.625547
Target:  5'- cUCG-AUCGCccGGCaGGCGUCGGcgACg -3'
miRNA:   3'- -GGCuUAGUGa-CCG-CCGCAGCCuaUGg -5'
26420 3' -53.5 NC_005345.2 + 4374 0.69 0.636574
Target:  5'- gCCGc-UCGgUGGgGGUGUCGGucACCg -3'
miRNA:   3'- -GGCuuAGUgACCgCCGCAGCCuaUGG- -5'
26420 3' -53.5 NC_005345.2 + 5644 0.69 0.636574
Target:  5'- gCCGggUuCGCcgcgaccuUGGCGGCGaUCGaGGUcACCu -3'
miRNA:   3'- -GGCuuA-GUG--------ACCGCCGC-AGC-CUA-UGG- -5'
26420 3' -53.5 NC_005345.2 + 34145 0.69 0.647596
Target:  5'- aUCGAGUgGCgcGGCGGCGgccccgaGGAgugGCCc -3'
miRNA:   3'- -GGCUUAgUGa-CCGCCGCag-----CCUa--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.