Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26420 | 3' | -53.5 | NC_005345.2 | + | 3455 | 0.67 | 0.775635 |
Target: 5'- cCCGAGcUCGCgcgGGC--UGUCGGAcaUGCCu -3' miRNA: 3'- -GGCUU-AGUGa--CCGccGCAGCCU--AUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 31405 | 0.67 | 0.765511 |
Target: 5'- gCCGuccuGGUCGCUcGG-GGCGUCacGGUGCCu -3' miRNA: 3'- -GGC----UUAGUGA-CCgCCGCAGc-CUAUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 3233 | 0.67 | 0.765511 |
Target: 5'- uUCGGGcagcgCACUGugcacGCGGCGcUCGG-UGCCg -3' miRNA: 3'- -GGCUUa----GUGAC-----CGCCGC-AGCCuAUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 35005 | 0.67 | 0.765511 |
Target: 5'- gCCGGggCGCUgcGGCGGCcacGUgGGGgcgggACCg -3' miRNA: 3'- -GGCUuaGUGA--CCGCCG---CAgCCUa----UGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 3128 | 0.67 | 0.764491 |
Target: 5'- gCCGAGgcgcCACUGcacagccgugccGaCGGCGUCGGcgagcucgucgggGUGCCg -3' miRNA: 3'- -GGCUUa---GUGAC------------C-GCCGCAGCC-------------UAUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 30295 | 0.67 | 0.761423 |
Target: 5'- gCCGAAggaguagccCGgUGGCGGCGUacgcaacggucgaGGAcUACCa -3' miRNA: 3'- -GGCUUa--------GUgACCGCCGCAg------------CCU-AUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 21801 | 0.67 | 0.75525 |
Target: 5'- aCUGAuUCGaUGGCGGCGgccgaGGGU-CCg -3' miRNA: 3'- -GGCUuAGUgACCGCCGCag---CCUAuGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 23111 | 0.67 | 0.744863 |
Target: 5'- gCCGAGgcgaGCgaGGCGGCGagUCGGGUcuguCCc -3' miRNA: 3'- -GGCUUag--UGa-CCGCCGC--AGCCUAu---GG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 35321 | 0.67 | 0.744863 |
Target: 5'- cCCGggUUGCggGGCGGacgcuGUCGacGUACCu -3' miRNA: 3'- -GGCuuAGUGa-CCGCCg----CAGCc-UAUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 35892 | 0.67 | 0.744863 |
Target: 5'- gCGGuUCGCcgacGGCGGCaucGUCGGGUGgCu -3' miRNA: 3'- gGCUuAGUGa---CCGCCG---CAGCCUAUgG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 31230 | 0.68 | 0.734361 |
Target: 5'- gCCGggUgUACggcgGGUccGGgGUCGGGUGCg -3' miRNA: 3'- -GGCuuA-GUGa---CCG--CCgCAGCCUAUGg -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 31929 | 0.68 | 0.734361 |
Target: 5'- gUCGAGUaaaGCUcGGCGG-GUgCGGGUGCg -3' miRNA: 3'- -GGCUUAg--UGA-CCGCCgCA-GCCUAUGg -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 18500 | 0.68 | 0.726948 |
Target: 5'- cCCGggUCGaggucgagcgaguacGCGGCGUCGGcguCCg -3' miRNA: 3'- -GGCuuAGUgac------------CGCCGCAGCCuauGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 40240 | 0.68 | 0.723757 |
Target: 5'- gCCGuGAUC-CUGGCGaGCGgggaCGGGgcGCCg -3' miRNA: 3'- -GGC-UUAGuGACCGC-CGCa---GCCUa-UGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 8719 | 0.68 | 0.693613 |
Target: 5'- gCCGAcucguccGUCGCcGGCGGCGauccguacggacgcgUCGGcgguguggcuggcGUGCCa -3' miRNA: 3'- -GGCU-------UAGUGaCCGCCGC---------------AGCC-------------UAUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 13043 | 0.68 | 0.691439 |
Target: 5'- aCCGGAUCACcGGCaGCGgcaucgugUGGAccggACCc -3' miRNA: 3'- -GGCUUAGUGaCCGcCGCa-------GCCUa---UGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 36060 | 0.69 | 0.667394 |
Target: 5'- aCCGAGUCACgguucucaccggGGCGGgGgauGGGU-CCg -3' miRNA: 3'- -GGCUUAGUGa-----------CCGCCgCag-CCUAuGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 32780 | 0.69 | 0.658605 |
Target: 5'- cCCGAucGUCGCgaucaccGCGGCGcCGGccgcgAUGCCg -3' miRNA: 3'- -GGCU--UAGUGac-----CGCCGCaGCC-----UAUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 22417 | 0.69 | 0.647596 |
Target: 5'- gCCGGuucaucgcuGUCACggGGCGGaCGuUCGGcgacAUGCCa -3' miRNA: 3'- -GGCU---------UAGUGa-CCGCC-GC-AGCC----UAUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 11587 | 0.69 | 0.647596 |
Target: 5'- aCGGGcgccUCGC-GGUGGCGUgGGGcgGCCg -3' miRNA: 3'- gGCUU----AGUGaCCGCCGCAgCCUa-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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