miRNA display CGI


Results 21 - 40 of 362 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26420 5' -61.6 NC_005345.2 + 2008 0.66 0.379803
Target:  5'- aCAGCGCCcccuCGcuCCGCUgcuccgggGCCGGCcuGCa -3'
miRNA:   3'- aGUCGUGGu---GCu-GGCGG--------CGGCCGu-CG- -5'
26420 5' -61.6 NC_005345.2 + 235 0.66 0.378947
Target:  5'- -uGGCGCCACaggcagaGACCcCCGCCGuGUaugucGGCg -3'
miRNA:   3'- agUCGUGGUG-------CUGGcGGCGGC-CG-----UCG- -5'
26420 5' -61.6 NC_005345.2 + 11866 0.66 0.378947
Target:  5'- aUCGGCccugcacgacguGCCccucgacgacgacGCGACCGCCGCCGuC-GCc -3'
miRNA:   3'- -AGUCG------------UGG-------------UGCUGGCGGCGGCcGuCG- -5'
26420 5' -61.6 NC_005345.2 + 29393 0.66 0.374686
Target:  5'- aCGGCu---CGGCCGCCGCCucGGCcucggucgccucgcgGGCg -3'
miRNA:   3'- aGUCGugguGCUGGCGGCGG--CCG---------------UCG- -5'
26420 5' -61.6 NC_005345.2 + 35863 0.66 0.371302
Target:  5'- aUCAaccGCACCgGCGA--GCUGCCGGUgcAGCg -3'
miRNA:   3'- -AGU---CGUGG-UGCUggCGGCGGCCG--UCG- -5'
26420 5' -61.6 NC_005345.2 + 11170 0.66 0.371302
Target:  5'- gCGGCACCccgGCGcagguCCGCagccuggucgaCGCCGGCcuguGGCa -3'
miRNA:   3'- aGUCGUGG---UGCu----GGCG-----------GCGGCCG----UCG- -5'
26420 5' -61.6 NC_005345.2 + 16869 0.66 0.371302
Target:  5'- -aGGCGCggUACGGCCGa-GCgUGGCGGCg -3'
miRNA:   3'- agUCGUG--GUGCUGGCggCG-GCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 21199 0.66 0.371302
Target:  5'- uUCGGguUCACGcgcuCCGCCGaccucgaCGGCAccGCg -3'
miRNA:   3'- -AGUCguGGUGCu---GGCGGCg------GCCGU--CG- -5'
26420 5' -61.6 NC_005345.2 + 31187 0.66 0.371302
Target:  5'- gCGGC-CCggcagGCGGCCGagccggaCGCCGGaCAGUu -3'
miRNA:   3'- aGUCGuGG-----UGCUGGCg------GCGGCC-GUCG- -5'
26420 5' -61.6 NC_005345.2 + 9933 0.66 0.371302
Target:  5'- gUCGGCgucgGCC-CGACgGUCGCCaacccGCGGCc -3'
miRNA:   3'- -AGUCG----UGGuGCUGgCGGCGGc----CGUCG- -5'
26420 5' -61.6 NC_005345.2 + 43926 0.66 0.371302
Target:  5'- gUCGGCgaucaggccgGCCGCGAgCUGCCcgGCCGuGCcggGGCg -3'
miRNA:   3'- -AGUCG----------UGGUGCU-GGCGG--CGGC-CG---UCG- -5'
26420 5' -61.6 NC_005345.2 + 40040 0.66 0.371302
Target:  5'- gCAGaucuucgauCACCGCGACgugcgggcgguCGCCGgcgaCGGCGGCc -3'
miRNA:   3'- aGUC---------GUGGUGCUG-----------GCGGCg---GCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 7463 0.66 0.371302
Target:  5'- -aAGC-UCGCGua-GUCGCCGGUAGCc -3'
miRNA:   3'- agUCGuGGUGCuggCGGCGGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 13891 0.66 0.371302
Target:  5'- aCAGCcuucagggugAgCACGAUCGCgucgaaCGCCGGCuugAGCg -3'
miRNA:   3'- aGUCG----------UgGUGCUGGCG------GCGGCCG---UCG- -5'
26420 5' -61.6 NC_005345.2 + 1206 0.66 0.371302
Target:  5'- cCGGC-CCGCGGgccaCGCCGCgCGGUacgggucccauGGCu -3'
miRNA:   3'- aGUCGuGGUGCUg---GCGGCG-GCCG-----------UCG- -5'
26420 5' -61.6 NC_005345.2 + 1180 0.66 0.371302
Target:  5'- gCGGCGCaCACGG--GCgGCuCGGCAGUc -3'
miRNA:   3'- aGUCGUG-GUGCUggCGgCG-GCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 36331 0.66 0.371302
Target:  5'- gCGGCGCagGCGaACCGgCggGCCGaGCGGCu -3'
miRNA:   3'- aGUCGUGg-UGC-UGGCgG--CGGC-CGUCG- -5'
26420 5' -61.6 NC_005345.2 + 46054 0.66 0.368777
Target:  5'- cCGGgGCCcgagggucgaucagGCGGCCgggGCCGCCGG-GGCc -3'
miRNA:   3'- aGUCgUGG--------------UGCUGG---CGGCGGCCgUCG- -5'
26420 5' -61.6 NC_005345.2 + 18217 0.66 0.363763
Target:  5'- -gGGCGCCGCGuucggguacgggcucGCCcuggucccggugcuGCuCGCCGGCcGCg -3'
miRNA:   3'- agUCGUGGUGC---------------UGG--------------CG-GCGGCCGuCG- -5'
26420 5' -61.6 NC_005345.2 + 5054 0.66 0.362932
Target:  5'- -aGGCugCA-GACCGCUGUgaGCAGCu -3'
miRNA:   3'- agUCGugGUgCUGGCGGCGgcCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.