Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 22015 | 0.67 | 0.39728 |
Target: 5'- gGGCAGCUCGAc--GCCGGCcggUGC-CGc -3' miRNA: 3'- gCCGUCGGGCUcaaUGGCCG---ACGaGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 4466 | 0.67 | 0.39728 |
Target: 5'- gCGGgGGCCCGGcg-GCCGuGUccgGCUCGa -3' miRNA: 3'- -GCCgUCGGGCUcaaUGGC-CGa--CGAGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 48221 | 0.67 | 0.394601 |
Target: 5'- cCGGCGGCCgaccuggacauuggCGAGgcGCCGGCgaaGCa-- -3' miRNA: 3'- -GCCGUCGG--------------GCUCaaUGGCCGa--CGagc -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 25779 | 0.67 | 0.388395 |
Target: 5'- gGGCAGCUCGGGcgccUCGGCccGCUCc -3' miRNA: 3'- gCCGUCGGGCUCaau-GGCCGa-CGAGc -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 8929 | 0.67 | 0.388395 |
Target: 5'- aCGGCGGCCgcccccgugggCGGGcUGCgGG-UGCUCGg -3' miRNA: 3'- -GCCGUCGG-----------GCUCaAUGgCCgACGAGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 14349 | 0.67 | 0.37964 |
Target: 5'- aCGGCGuGCgCGAGgaccgcgacCCGGCgcaGCUCGg -3' miRNA: 3'- -GCCGU-CGgGCUCaau------GGCCGa--CGAGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 38508 | 0.67 | 0.37964 |
Target: 5'- -cGCGGuCCCuGAGUcACgCGuGCUGCUCGa -3' miRNA: 3'- gcCGUC-GGG-CUCAaUG-GC-CGACGAGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 38379 | 0.67 | 0.37964 |
Target: 5'- gCGGCuGUCuCGAcg-GCCGGCagggGCUCGg -3' miRNA: 3'- -GCCGuCGG-GCUcaaUGGCCGa---CGAGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 29151 | 0.67 | 0.37704 |
Target: 5'- cCGGCAGCCCGccuGUcGCCcucGGCgaaccgggucggcaUGCUCu -3' miRNA: 3'- -GCCGUCGGGCu--CAaUGG---CCG--------------ACGAGc -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 37953 | 0.67 | 0.376176 |
Target: 5'- aCGGU-GCCCGAGcggaucgggauCCGGUgGCUCGa -3' miRNA: 3'- -GCCGuCGGGCUCaau--------GGCCGaCGAGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 5164 | 0.68 | 0.371019 |
Target: 5'- gCGGCGGCCgacgagucgggCGAGccGCCGGgCUGCacgcaUCGg -3' miRNA: 3'- -GCCGUCGG-----------GCUCaaUGGCC-GACG-----AGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 23185 | 0.68 | 0.371019 |
Target: 5'- -cGC-GCUCGGGUUcgACCGGCUGCg-- -3' miRNA: 3'- gcCGuCGGGCUCAA--UGGCCGACGagc -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 42754 | 0.68 | 0.371019 |
Target: 5'- cCGGCA-CCCGgcGGUUGCCGG--GCUUGg -3' miRNA: 3'- -GCCGUcGGGC--UCAAUGGCCgaCGAGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 47946 | 0.68 | 0.362533 |
Target: 5'- gCGGCguGGCCCGcgg-GCCGGaCUGC-CGa -3' miRNA: 3'- -GCCG--UCGGGCucaaUGGCC-GACGaGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 25577 | 0.68 | 0.362533 |
Target: 5'- gGGCcGCCCGcAGcUGCCGGUgcUGC-CGa -3' miRNA: 3'- gCCGuCGGGC-UCaAUGGCCG--ACGaGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 30370 | 0.68 | 0.362533 |
Target: 5'- aCGGCAGCCCGcg--GCgGGCgcaGgUCGa -3' miRNA: 3'- -GCCGUCGGGCucaaUGgCCGa--CgAGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 19323 | 0.68 | 0.362533 |
Target: 5'- -cGUGGCCgCGAcGaUGCCgGGCUGCUCGc -3' miRNA: 3'- gcCGUCGG-GCU-CaAUGG-CCGACGAGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 35759 | 0.68 | 0.360013 |
Target: 5'- gCGGCAuCCCGGGgcaggacucgauucCCGcGCUGCUCa -3' miRNA: 3'- -GCCGUcGGGCUCaau-----------GGC-CGACGAGc -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 15376 | 0.68 | 0.356673 |
Target: 5'- aCGGCagcgcggggguacuuGGCCCGGGUgcUGCCugcgacgGGCaccgGCUCGg -3' miRNA: 3'- -GCCG---------------UCGGGCUCA--AUGG-------CCGa---CGAGC- -5' |
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26421 | 3' | -59.5 | NC_005345.2 | + | 41072 | 0.68 | 0.354182 |
Target: 5'- -uGCAGCCCG----GCCGcCUGCUCGg -3' miRNA: 3'- gcCGUCGGGCucaaUGGCcGACGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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