miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26423 5' -62 NC_005345.2 + 12206 0.66 0.327745
Target:  5'- uGCCGcugUCCGGcCGCCGCcuccCGaGCCGUGg -3'
miRNA:   3'- -CGGUu--GGGCC-GCGGCGa---GCaCGGCAU- -5'
26423 5' -62 NC_005345.2 + 43056 0.66 0.327745
Target:  5'- cGCgGugCCGGC-UCGgUCGUGUCGUc -3'
miRNA:   3'- -CGgUugGGCCGcGGCgAGCACGGCAu -5'
26423 5' -62 NC_005345.2 + 39194 0.66 0.326973
Target:  5'- aGCCcgAACCCGG-GCCGCggguuggcgaccgUCGgGCCGa- -3'
miRNA:   3'- -CGG--UUGGGCCgCGGCG-------------AGCaCGGCau -5'
26423 5' -62 NC_005345.2 + 30912 0.66 0.325433
Target:  5'- -gCAACCCGGUgacgaccgccggcgGCCGCUCacgGUGCaCGg- -3'
miRNA:   3'- cgGUUGGGCCG--------------CGGCGAG---CACG-GCau -5'
26423 5' -62 NC_005345.2 + 6384 0.66 0.320084
Target:  5'- gGCCGaguuccaaGCCCGGCaaCCGCcggGUGCCGg- -3'
miRNA:   3'- -CGGU--------UGGGCCGc-GGCGag-CACGGCau -5'
26423 5' -62 NC_005345.2 + 38828 0.66 0.320084
Target:  5'- uGCaCGACC--GCGaacaCGCUCGUGCCGg- -3'
miRNA:   3'- -CG-GUUGGgcCGCg---GCGAGCACGGCau -5'
26423 5' -62 NC_005345.2 + 2796 0.66 0.320084
Target:  5'- uGUCGGCgCCGGCGUgCGCUCGaucGCCu-- -3'
miRNA:   3'- -CGGUUG-GGCCGCG-GCGAGCa--CGGcau -5'
26423 5' -62 NC_005345.2 + 13396 0.66 0.320084
Target:  5'- uCCugcCCCGGgaugcCGCCGCUCGUucgGCCGc- -3'
miRNA:   3'- cGGuu-GGGCC-----GCGGCGAGCA---CGGCau -5'
26423 5' -62 NC_005345.2 + 5429 0.66 0.320084
Target:  5'- cGCCGAguucUUCGGCGgCGCcCGggucgGCCGUAg -3'
miRNA:   3'- -CGGUU----GGGCCGCgGCGaGCa----CGGCAU- -5'
26423 5' -62 NC_005345.2 + 25537 0.67 0.312557
Target:  5'- aGCCGuGCCCGGUccGCCGgCgUCGcGCCGa- -3'
miRNA:   3'- -CGGU-UGGGCCG--CGGC-G-AGCaCGGCau -5'
26423 5' -62 NC_005345.2 + 20397 0.67 0.311812
Target:  5'- aCCGAgCCGGCcCCGC-CGUaccucccGCCGUGg -3'
miRNA:   3'- cGGUUgGGCCGcGGCGaGCA-------CGGCAU- -5'
26423 5' -62 NC_005345.2 + 7947 0.67 0.305166
Target:  5'- aGUCGAgCCGGCGggcggggaucCCGUcggucgucgugUCGUGCCGUc -3'
miRNA:   3'- -CGGUUgGGCCGC----------GGCG-----------AGCACGGCAu -5'
26423 5' -62 NC_005345.2 + 10570 0.67 0.305166
Target:  5'- cCCGGCCgCGaGCGCCacguacGC-CGUGCCGg- -3'
miRNA:   3'- cGGUUGG-GC-CGCGG------CGaGCACGGCau -5'
26423 5' -62 NC_005345.2 + 8665 0.67 0.305166
Target:  5'- cGCCGugCUGcugcuCGCCGCggCGgugGCCGUGa -3'
miRNA:   3'- -CGGUugGGCc----GCGGCGa-GCa--CGGCAU- -5'
26423 5' -62 NC_005345.2 + 40752 0.67 0.305166
Target:  5'- cGUCGA-CCGGCaGCgGCUCGUcggGCCGg- -3'
miRNA:   3'- -CGGUUgGGCCG-CGgCGAGCA---CGGCau -5'
26423 5' -62 NC_005345.2 + 19057 0.67 0.305166
Target:  5'- gGCgAACCCG--GCCGuCUCGggGCCGUGc -3'
miRNA:   3'- -CGgUUGGGCcgCGGC-GAGCa-CGGCAU- -5'
26423 5' -62 NC_005345.2 + 29374 0.67 0.305166
Target:  5'- aGCCAcgGCUCGGUGUCguacgGCUCG-GCCGc- -3'
miRNA:   3'- -CGGU--UGGGCCGCGG-----CGAGCaCGGCau -5'
26423 5' -62 NC_005345.2 + 2950 0.67 0.297909
Target:  5'- aUCAACCgGGCggaaagGUCGUUCGcGCCGUAc -3'
miRNA:   3'- cGGUUGGgCCG------CGGCGAGCaCGGCAU- -5'
26423 5' -62 NC_005345.2 + 17564 0.67 0.297909
Target:  5'- cGCCGagcaggGCCCGGCagaGCUGCaucaggUCGUGCgCGUc -3'
miRNA:   3'- -CGGU------UGGGCCG---CGGCG------AGCACG-GCAu -5'
26423 5' -62 NC_005345.2 + 18193 0.67 0.297909
Target:  5'- cGCCGuuccaaugcACCCGGuCGCgGC-CGUGCacCGUGa -3'
miRNA:   3'- -CGGU---------UGGGCC-GCGgCGaGCACG--GCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.