miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 3' -56.1 NC_005345.2 + 31325 0.67 0.630362
Target:  5'- gGUCUg-GAGGGCGGCCGgacGUGACCa -3'
miRNA:   3'- aCAGGgaCUCUUGCUGGUgc-CGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 3193 0.67 0.630362
Target:  5'- aG-CCCUGAGGGauguCGuACC-CGGCGAUg -3'
miRNA:   3'- aCaGGGACUCUU----GC-UGGuGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 29868 0.67 0.630362
Target:  5'- gGUCCggCUGuGGACG-CaCGCGGCcGCCg -3'
miRNA:   3'- aCAGG--GACuCUUGCuG-GUGCCGcUGG- -5'
26424 3' -56.1 NC_005345.2 + 42682 0.67 0.627086
Target:  5'- cGUgCCUGAccuguggaugccggGcGCGACCcggcuggauauCGGCGACCa -3'
miRNA:   3'- aCAgGGACU--------------CuUGCUGGu----------GCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 19746 0.67 0.623811
Target:  5'- cGUCgCUGucgcgugcaccgaccAGAGC-ACCGCGGCcacGACCg -3'
miRNA:   3'- aCAGgGAC---------------UCUUGcUGGUGCCG---CUGG- -5'
26424 3' -56.1 NC_005345.2 + 16344 0.67 0.619446
Target:  5'- aGUgCCUcgcGGAACGcgccgagcaucGCCGCGGCGucGCCg -3'
miRNA:   3'- aCAgGGAc--UCUUGC-----------UGGUGCCGC--UGG- -5'
26424 3' -56.1 NC_005345.2 + 47853 0.67 0.619446
Target:  5'- aUGUCaggUGGGcAugGGCC-CGGCGACg -3'
miRNA:   3'- -ACAGgg-ACUC-UugCUGGuGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 24446 0.67 0.60854
Target:  5'- gGUCgCgGAGAacucgGCGGCCGacuaucaGGCGAUCa -3'
miRNA:   3'- aCAGgGaCUCU-----UGCUGGUg------CCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 46116 0.67 0.60854
Target:  5'- cGaCCCUGucGGGGuCGAa-GCGGCGGCCu -3'
miRNA:   3'- aCaGGGAC--UCUU-GCUggUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 24136 0.67 0.59548
Target:  5'- cGUCgCgaacgccucGGCGACCGCGGCGAgCa -3'
miRNA:   3'- aCAGgGacuc-----UUGCUGGUGCCGCUgG- -5'
26424 3' -56.1 NC_005345.2 + 24479 0.67 0.586798
Target:  5'- gUGUCCCaGAacucgcccguGAGCcGCUcgauCGGCGACCa -3'
miRNA:   3'- -ACAGGGaCU----------CUUGcUGGu---GCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 36483 0.67 0.575978
Target:  5'- cGaCCCggcGGGuACG-CCaACGGCGGCCg -3'
miRNA:   3'- aCaGGGa--CUCuUGCuGG-UGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 1161 0.67 0.575978
Target:  5'- cG-CCgCgagGGGAGCGugCGCGGCGcACa -3'
miRNA:   3'- aCaGG-Ga--CUCUUGCugGUGCCGC-UGg -5'
26424 3' -56.1 NC_005345.2 + 13241 0.67 0.575978
Target:  5'- cGUCCCcGAGccacccGACGaugccGCCGuCGGCGAaCCg -3'
miRNA:   3'- aCAGGGaCUC------UUGC-----UGGU-GCCGCU-GG- -5'
26424 3' -56.1 NC_005345.2 + 9224 0.68 0.561982
Target:  5'- aGUCCCggcGAcgcucaagucguacGccuGCGACCACGguGCGGCCg -3'
miRNA:   3'- aCAGGGa--CU--------------Cu--UGCUGGUGC--CGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 43119 0.68 0.543824
Target:  5'- cGUCCCgGAccGGugGcCCaACGGcCGGCCg -3'
miRNA:   3'- aCAGGGaCU--CUugCuGG-UGCC-GCUGG- -5'
26424 3' -56.1 NC_005345.2 + 41020 0.68 0.533232
Target:  5'- cGgCCaaGAGccguCGACgACGGCGGCCg -3'
miRNA:   3'- aCaGGgaCUCuu--GCUGgUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 46055 0.68 0.533232
Target:  5'- cGgggCCC-GAGGGuCGAUCA-GGCGGCCg -3'
miRNA:   3'- aCa--GGGaCUCUU-GCUGGUgCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 34971 0.68 0.530069
Target:  5'- cGUCCUggucgucGAGGGCGugcagguacucggcGCCggggcgcuGCGGCGGCCa -3'
miRNA:   3'- aCAGGGa------CUCUUGC--------------UGG--------UGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 30697 0.68 0.522715
Target:  5'- cGgCCggCUGcGggUGGCCGCGGUGAUCg -3'
miRNA:   3'- aCaGG--GACuCuuGCUGGUGCCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.