miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 5' -56.7 NC_005345.2 + 33518 0.73 0.235879
Target:  5'- cGGCCCcgacCGgugugUCAcCACCGACCGGGGc -3'
miRNA:   3'- aCCGGGc---GUa----AGUaGUGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 33482 0.66 0.612597
Target:  5'- gGGCCCGgug-UGUCACC-ACCGGGc -3'
miRNA:   3'- aCCGGGCguaaGUAGUGGcUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 33443 0.68 0.453757
Target:  5'- cGGCCCGCAaggugUGUCACC-ACCugcGGGGu -3'
miRNA:   3'- aCCGGGCGUaa---GUAGUGGcUGG---UCCU- -5'
26424 5' -56.7 NC_005345.2 + 32893 0.67 0.547105
Target:  5'- cGGCCCGCAggCugggggCGCugcgggccgguCGAUCAGGGg -3'
miRNA:   3'- aCCGGGCGUaaGua----GUG-----------GCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 31659 0.67 0.525728
Target:  5'- cGGCCCGCAguuccUUCccgaCGCCGAgaCAGGc -3'
miRNA:   3'- aCCGGGCGU-----AAGua--GUGGCUg-GUCCu -5'
26424 5' -56.7 NC_005345.2 + 31610 0.68 0.440977
Target:  5'- cGGCCCGCGgaucgCAuggcgacacgguccUCGCCcGGCCGGcGAc -3'
miRNA:   3'- aCCGGGCGUaa---GU--------------AGUGG-CUGGUC-CU- -5'
26424 5' -56.7 NC_005345.2 + 31497 0.7 0.369741
Target:  5'- cGGcCCCGCGaacacggUCGUgACCGACCGGc- -3'
miRNA:   3'- aCC-GGGCGUa------AGUAgUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 30903 0.71 0.30451
Target:  5'- cGGCCgGCGagCAgCACCGggACCAGGGc -3'
miRNA:   3'- aCCGGgCGUaaGUaGUGGC--UGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 30426 0.7 0.344199
Target:  5'- aUGGCgCGCca-CAUC-CCGACCGGGc -3'
miRNA:   3'- -ACCGgGCGuaaGUAGuGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 30299 0.7 0.361085
Target:  5'- cGGCCCGCAccugC-UCGCCugccccguuGACCAGGc -3'
miRNA:   3'- aCCGGGCGUaa--GuAGUGG---------CUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 30190 0.68 0.443908
Target:  5'- gUGGCgCuCGUUCcUCGCCGACCAcGAg -3'
miRNA:   3'- -ACCGgGcGUAAGuAGUGGCUGGUcCU- -5'
26424 5' -56.7 NC_005345.2 + 30072 0.66 0.598289
Target:  5'- cGGCCCGCAcgaucgCGUagACCccguaggcgaccacGGCCAGGGc -3'
miRNA:   3'- aCCGGGCGUaa----GUAg-UGG--------------CUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 29983 0.69 0.40576
Target:  5'- gGGCUCGUcggCGUCcUCGGCCGGGGu -3'
miRNA:   3'- aCCGGGCGuaaGUAGuGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 28164 0.71 0.327889
Target:  5'- cGGUCgGCGUUCcUCGCCGcgGCCAaGGGg -3'
miRNA:   3'- aCCGGgCGUAAGuAGUGGC--UGGU-CCU- -5'
26424 5' -56.7 NC_005345.2 + 26899 0.69 0.415104
Target:  5'- aGGCgCUGCAggCGgcgcUCGCCGACCGGu- -3'
miRNA:   3'- aCCG-GGCGUaaGU----AGUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 26260 0.71 0.30451
Target:  5'- cGGCaCGCucUCGUCGaCGACCAGGAc -3'
miRNA:   3'- aCCGgGCGuaAGUAGUgGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 25862 0.67 0.515157
Target:  5'- cGGCCgGCcgUCGcCGCUGAUCAcgauGGAg -3'
miRNA:   3'- aCCGGgCGuaAGUaGUGGCUGGU----CCU- -5'
26424 5' -56.7 NC_005345.2 + 25290 0.81 0.069357
Target:  5'- gGGCUCGCcgUCGUC-CCGGCCGGGc -3'
miRNA:   3'- aCCGGGCGuaAGUAGuGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 25201 0.67 0.557899
Target:  5'- -aGCCCGCGgugaaUCAccCGCCGGCCGGu- -3'
miRNA:   3'- acCGGGCGUa----AGUa-GUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 23766 0.66 0.568751
Target:  5'- aGGCCgGCGgcgaucgCGUCgaGCCGgcacugccacGCCAGGAc -3'
miRNA:   3'- aCCGGgCGUaa-----GUAG--UGGC----------UGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.