miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 5' -56.7 NC_005345.2 + 23632 0.7 0.373243
Target:  5'- cGGCUgCGCAUgguguucgccgaggCGgacggCGCCGACCAGGGu -3'
miRNA:   3'- aCCGG-GCGUAa-------------GUa----GUGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 19743 0.67 0.547105
Target:  5'- cGGCgUCGCugucgCGUgCACCGACCAGa- -3'
miRNA:   3'- aCCG-GGCGuaa--GUA-GUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 19277 0.67 0.547105
Target:  5'- cGGCggCCGCGUgCGUCcacaGCCGgACCGGGu -3'
miRNA:   3'- aCCG--GGCGUAaGUAG----UGGC-UGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 18906 0.67 0.504673
Target:  5'- cGGaCCCGCAccgUCGUCgACCGGCuCAccgccGGAu -3'
miRNA:   3'- aCC-GGGCGUa--AGUAG-UGGCUG-GU-----CCU- -5'
26424 5' -56.7 NC_005345.2 + 17877 0.66 0.568751
Target:  5'- gGGUCCGCcgUggcguaGUCGCCGAUCAcGGc -3'
miRNA:   3'- aCCGGGCGuaAg-----UAGUGGCUGGU-CCu -5'
26424 5' -56.7 NC_005345.2 + 17508 0.71 0.297006
Target:  5'- cGGgCCGCcg--GUCGCCGGCCGGGc -3'
miRNA:   3'- aCCgGGCGuaagUAGUGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 16366 0.66 0.612597
Target:  5'- cGGCgCCGCggUgAUCGCgaCGAUCGGGu -3'
miRNA:   3'- aCCG-GGCGuaAgUAGUG--GCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 16036 0.69 0.414164
Target:  5'- -aGCCCGUcgUUGUCGCCGAgcgcgauCCGGGu -3'
miRNA:   3'- acCGGGCGuaAGUAGUGGCU-------GGUCCu -5'
26424 5' -56.7 NC_005345.2 + 15394 0.68 0.494282
Target:  5'- uUGGCCCGgGUgcugccugCGacgggCACCGGCuCGGGGa -3'
miRNA:   3'- -ACCGGGCgUAa-------GUa----GUGGCUG-GUCCU- -5'
26424 5' -56.7 NC_005345.2 + 14640 0.75 0.185661
Target:  5'- cGGCCCGCcUcgaccgcguccUCggCACCGGCCGGGc -3'
miRNA:   3'- aCCGGGCGuA-----------AGuaGUGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 12818 0.79 0.092465
Target:  5'- cGGCCCGCcgGUUCGccugcgccgcaUCACCGGCgAGGAc -3'
miRNA:   3'- aCCGGGCG--UAAGU-----------AGUGGCUGgUCCU- -5'
26424 5' -56.7 NC_005345.2 + 12323 0.68 0.463723
Target:  5'- cGGCCUGCAc----CGCCGGCCAGc- -3'
miRNA:   3'- aCCGGGCGUaaguaGUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 12260 0.7 0.361085
Target:  5'- aGGCCCGgcuCGUUCGgaccguaCGCCGACCuGGu -3'
miRNA:   3'- aCCGGGC---GUAAGUa------GUGGCUGGuCCu -5'
26424 5' -56.7 NC_005345.2 + 11808 0.66 0.610393
Target:  5'- aGGCUCGCuccgagacgggUCAUCGCCGucugCAGGu -3'
miRNA:   3'- aCCGGGCGua---------AGUAGUGGCug--GUCCu -5'
26424 5' -56.7 NC_005345.2 + 11488 0.68 0.473802
Target:  5'- gGGCCgCGCAggCGgcccgCACCGACgCcGGAc -3'
miRNA:   3'- aCCGG-GCGUaaGUa----GUGGCUG-GuCCU- -5'
26424 5' -56.7 NC_005345.2 + 11185 0.7 0.361085
Target:  5'- aGGUCCGCAgccuggUCGaCGCCGGCCuguGGc -3'
miRNA:   3'- aCCGGGCGUa-----AGUaGUGGCUGGu--CCu -5'
26424 5' -56.7 NC_005345.2 + 10736 0.68 0.473802
Target:  5'- aUGGCCgCGCucgaugUCGUCGCCGACg---- -3'
miRNA:   3'- -ACCGG-GCGua----AGUAGUGGCUGguccu -5'
26424 5' -56.7 NC_005345.2 + 10646 0.66 0.576379
Target:  5'- gGGCUCGCcaUgGUCgcccgggucggcgaGCCGAUCAGGGu -3'
miRNA:   3'- aCCGGGCGuaAgUAG--------------UGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 9304 0.72 0.282432
Target:  5'- cGGCCgGCGUugaguUCGUCGgCGACCcGGGc -3'
miRNA:   3'- aCCGGgCGUA-----AGUAGUgGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 7607 0.68 0.473802
Target:  5'- aGGCCgGUGUcggagcaCAUCGCCGACCcGGc -3'
miRNA:   3'- aCCGGgCGUAa------GUAGUGGCUGGuCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.