miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 5' -56.7 NC_005345.2 + 776 0.66 0.58403
Target:  5'- cGGCCgGCGgcgggggauGCCGACCGGGc -3'
miRNA:   3'- aCCGGgCGUaaguag---UGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 30072 0.66 0.598289
Target:  5'- cGGCCCGCAcgaucgCGUagACCccguaggcgaccacGGCCAGGGc -3'
miRNA:   3'- aCCGGGCGUaa----GUAg-UGG--------------CUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 30299 0.7 0.361085
Target:  5'- cGGCCCGCAccugC-UCGCCugccccguuGACCAGGc -3'
miRNA:   3'- aCCGGGCGUaa--GuAGUGG---------CUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 11808 0.66 0.610393
Target:  5'- aGGCUCGCuccgagacgggUCAUCGCCGucugCAGGu -3'
miRNA:   3'- aCCGGGCGua---------AGUAGUGGCug--GUCCu -5'
26424 5' -56.7 NC_005345.2 + 3820 0.7 0.378539
Target:  5'- aGGCCgCGCAgcagC-UCGCCGGCUcGGAu -3'
miRNA:   3'- aCCGG-GCGUaa--GuAGUGGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 45314 0.67 0.557899
Target:  5'- gGGUCCGCA--CGcCGCCGACCucgcagcGGAc -3'
miRNA:   3'- aCCGGGCGUaaGUaGUGGCUGGu------CCU- -5'
26424 5' -56.7 NC_005345.2 + 19743 0.67 0.547105
Target:  5'- cGGCgUCGCugucgCGUgCACCGACCAGa- -3'
miRNA:   3'- aCCG-GGCGuaa--GUA-GUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 12323 0.68 0.463723
Target:  5'- cGGCCUGCAc----CGCCGGCCAGc- -3'
miRNA:   3'- aCCGGGCGUaaguaGUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 44522 0.68 0.463723
Target:  5'- cGaUCCGCGUUCAgcaGCuCGACCAGGu -3'
miRNA:   3'- aCcGGGCGUAAGUag-UG-GCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 7607 0.68 0.473802
Target:  5'- aGGCCgGUGUcggagcaCAUCGCCGACCcGGc -3'
miRNA:   3'- aCCGGgCGUAa------GUAGUGGCUGGuCCu -5'
26424 5' -56.7 NC_005345.2 + 45379 0.72 0.261641
Target:  5'- gGGUCCGCGUUCAccUCGgCCGuCCAGcGGa -3'
miRNA:   3'- aCCGGGCGUAAGU--AGU-GGCuGGUC-CU- -5'
26424 5' -56.7 NC_005345.2 + 38126 0.73 0.248485
Target:  5'- gGGCCC-----CGUCAUCGACCGGGAa -3'
miRNA:   3'- aCCGGGcguaaGUAGUGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 33518 0.73 0.235879
Target:  5'- cGGCCCcgacCGgugugUCAcCACCGACCGGGGc -3'
miRNA:   3'- aCCGGGc---GUa----AGUaGUGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 6294 0.76 0.141144
Target:  5'- gGGgCCGCcUUCAUC-CCGGCCGGGu -3'
miRNA:   3'- aCCgGGCGuAAGUAGuGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 25290 0.81 0.069357
Target:  5'- gGGCUCGCcgUCGUC-CCGGCCGGGc -3'
miRNA:   3'- aCCGGGCGuaAGUAGuGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 48199 0.67 0.525728
Target:  5'- cGGCCgGCGUauccCGUUcaacccggcgGCCGACCuGGAc -3'
miRNA:   3'- aCCGGgCGUAa---GUAG----------UGGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 42108 0.67 0.525728
Target:  5'- cGGgCCGCc-UCgAUCGCCGGCCGGu- -3'
miRNA:   3'- aCCgGGCGuaAG-UAGUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 46057 0.67 0.53638
Target:  5'- gGGCCCGagggUCgAUCAggCGGCCGGGGc -3'
miRNA:   3'- aCCGGGCgua-AG-UAGUg-GCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 16036 0.69 0.414164
Target:  5'- -aGCCCGUcgUUGUCGCCGAgcgcgauCCGGGu -3'
miRNA:   3'- acCGGGCGuaAGUAGUGGCU-------GGUCCu -5'
26424 5' -56.7 NC_005345.2 + 6023 0.71 0.335972
Target:  5'- cGGCCgGCcgUUGggcCACCGGuCCGGGAc -3'
miRNA:   3'- aCCGGgCGuaAGUa--GUGGCU-GGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.