miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 5' -56.7 NC_005345.2 + 6023 0.71 0.335972
Target:  5'- cGGCCgGCcgUUGggcCACCGGuCCGGGAc -3'
miRNA:   3'- aCCGGgCGuaAGUa--GUGGCU-GGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 43501 0.7 0.35257
Target:  5'- gGGCCCGCcgggCggUGCCGAUCGGGu -3'
miRNA:   3'- aCCGGGCGuaa-GuaGUGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 3820 0.7 0.378539
Target:  5'- aGGCCgCGCAgcagC-UCGCCGGCUcGGAu -3'
miRNA:   3'- aCCGG-GCGUaa--GuAGUGGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 29983 0.69 0.40576
Target:  5'- gGGCUCGUcggCGUCcUCGGCCGGGGu -3'
miRNA:   3'- aCCGGGCGuaaGUAGuGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 16036 0.69 0.414164
Target:  5'- -aGCCCGUcgUUGUCGCCGAgcgcgauCCGGGu -3'
miRNA:   3'- acCGGGCGuaAGUAGUGGCU-------GGUCCu -5'
26424 5' -56.7 NC_005345.2 + 33443 0.68 0.453757
Target:  5'- cGGCCCGCAaggugUGUCACC-ACCugcGGGGu -3'
miRNA:   3'- aCCGGGCGUaa---GUAGUGGcUGG---UCCU- -5'
26424 5' -56.7 NC_005345.2 + 12323 0.68 0.463723
Target:  5'- cGGCCUGCAc----CGCCGGCCAGc- -3'
miRNA:   3'- aCCGGGCGUaaguaGUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 44522 0.68 0.463723
Target:  5'- cGaUCCGCGUUCAgcaGCuCGACCAGGu -3'
miRNA:   3'- aCcGGGCGUAAGUag-UG-GCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 7607 0.68 0.473802
Target:  5'- aGGCCgGUGUcggagcaCAUCGCCGACCcGGc -3'
miRNA:   3'- aCCGGgCGUAa------GUAGUGGCUGGuCCu -5'
26424 5' -56.7 NC_005345.2 + 48199 0.67 0.525728
Target:  5'- cGGCCgGCGUauccCGUUcaacccggcgGCCGACCuGGAc -3'
miRNA:   3'- aCCGGgCGUAa---GUAG----------UGGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 3645 0.66 0.612597
Target:  5'- -cGUCCGCAgcccggCggCAgCGGCCGGGAu -3'
miRNA:   3'- acCGGGCGUaa----GuaGUgGCUGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.