miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 5' -56.7 NC_005345.2 + 32893 0.67 0.547105
Target:  5'- cGGCCCGCAggCugggggCGCugcgggccgguCGAUCAGGGg -3'
miRNA:   3'- aCCGGGCGUaaGua----GUG-----------GCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 46057 0.67 0.53638
Target:  5'- gGGCCCGagggUCgAUCAggCGGCCGGGGc -3'
miRNA:   3'- aCCGGGCgua-AG-UAGUg-GCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 31659 0.67 0.525728
Target:  5'- cGGCCCGCAguuccUUCccgaCGCCGAgaCAGGc -3'
miRNA:   3'- aCCGGGCGU-----AAGua--GUGGCUg-GUCCu -5'
26424 5' -56.7 NC_005345.2 + 42108 0.67 0.525728
Target:  5'- cGGgCCGCc-UCgAUCGCCGGCCGGu- -3'
miRNA:   3'- aCCgGGCGuaAG-UAGUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 48199 0.67 0.525728
Target:  5'- cGGCCgGCGUauccCGUUcaacccggcgGCCGACCuGGAc -3'
miRNA:   3'- aCCGGgCGUAa---GUAG----------UGGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 25862 0.67 0.515157
Target:  5'- cGGCCgGCcgUCGcCGCUGAUCAcgauGGAg -3'
miRNA:   3'- aCCGGgCGuaAGUaGUGGCUGGU----CCU- -5'
26424 5' -56.7 NC_005345.2 + 18906 0.67 0.504673
Target:  5'- cGGaCCCGCAccgUCGUCgACCGGCuCAccgccGGAu -3'
miRNA:   3'- aCC-GGGCGUa--AGUAG-UGGCUG-GU-----CCU- -5'
26424 5' -56.7 NC_005345.2 + 15394 0.68 0.494282
Target:  5'- uUGGCCCGgGUgcugccugCGacgggCACCGGCuCGGGGa -3'
miRNA:   3'- -ACCGGGCgUAa-------GUa----GUGGCUG-GUCCU- -5'
26424 5' -56.7 NC_005345.2 + 10736 0.68 0.473802
Target:  5'- aUGGCCgCGCucgaugUCGUCGCCGACg---- -3'
miRNA:   3'- -ACCGG-GCGua----AGUAGUGGCUGguccu -5'
26424 5' -56.7 NC_005345.2 + 37604 0.68 0.473802
Target:  5'- cGGCUCGCGUUgcgaGUCGgCGACCGaGAg -3'
miRNA:   3'- aCCGGGCGUAAg---UAGUgGCUGGUcCU- -5'
26424 5' -56.7 NC_005345.2 + 11488 0.68 0.473802
Target:  5'- gGGCCgCGCAggCGgcccgCACCGACgCcGGAc -3'
miRNA:   3'- aCCGG-GCGUaaGUa----GUGGCUG-GuCCU- -5'
26424 5' -56.7 NC_005345.2 + 7607 0.68 0.473802
Target:  5'- aGGCCgGUGUcggagcaCAUCGCCGACCcGGc -3'
miRNA:   3'- aCCGGgCGUAa------GUAGUGGCUGGuCCu -5'
26424 5' -56.7 NC_005345.2 + 44522 0.68 0.463723
Target:  5'- cGaUCCGCGUUCAgcaGCuCGACCAGGu -3'
miRNA:   3'- aCcGGGCGUAAGUag-UG-GCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 12323 0.68 0.463723
Target:  5'- cGGCCUGCAc----CGCCGGCCAGc- -3'
miRNA:   3'- aCCGGGCGUaaguaGUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 33443 0.68 0.453757
Target:  5'- cGGCCCGCAaggugUGUCACC-ACCugcGGGGu -3'
miRNA:   3'- aCCGGGCGUaa---GUAGUGGcUGG---UCCU- -5'
26424 5' -56.7 NC_005345.2 + 30190 0.68 0.443908
Target:  5'- gUGGCgCuCGUUCcUCGCCGACCAcGAg -3'
miRNA:   3'- -ACCGgGcGUAAGuAGUGGCUGGUcCU- -5'
26424 5' -56.7 NC_005345.2 + 31610 0.68 0.440977
Target:  5'- cGGCCCGCGgaucgCAuggcgacacgguccUCGCCcGGCCGGcGAc -3'
miRNA:   3'- aCCGGGCGUaa---GU--------------AGUGG-CUGGUC-CU- -5'
26424 5' -56.7 NC_005345.2 + 47024 0.69 0.423625
Target:  5'- aGGCCUGCuUUCAcugcggcgccgucUCGacgacgcugaccCCGGCCGGGAc -3'
miRNA:   3'- aCCGGGCGuAAGU-------------AGU------------GGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 26899 0.69 0.415104
Target:  5'- aGGCgCUGCAggCGgcgcUCGCCGACCGGu- -3'
miRNA:   3'- aCCG-GGCGUaaGU----AGUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 16036 0.69 0.414164
Target:  5'- -aGCCCGUcgUUGUCGCCGAgcgcgauCCGGGu -3'
miRNA:   3'- acCGGGCGuaAGUAGUGGCU-------GGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.