miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26426 3' -61.1 NC_005345.2 + 15642 0.66 0.406333
Target:  5'- aCCgGUCGGGGCCgcaAUGCGACCg-- -3'
miRNA:   3'- -GGgCGGCCUCGGaggUGUGCUGGagc -5'
26426 3' -61.1 NC_005345.2 + 8956 0.66 0.406333
Target:  5'- gCUGCC-GAGCUgcaCGC-CGGCCUCGa -3'
miRNA:   3'- gGGCGGcCUCGGag-GUGuGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 24201 0.66 0.406333
Target:  5'- gCCCGUCGGGGCCgaguucgagUCGCgGCGGCUg-- -3'
miRNA:   3'- -GGGCGGCCUCGGa--------GGUG-UGCUGGagc -5'
26426 3' -61.1 NC_005345.2 + 35557 0.66 0.406333
Target:  5'- gCCGCCuucGGGCUcgCCcgggACGCGAUCUCGa -3'
miRNA:   3'- gGGCGGc--CUCGGa-GG----UGUGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 5530 0.66 0.405449
Target:  5'- cCCCGCCGGggGGCCcgaCCugAucagcgugacgaaCGuCCUCGg -3'
miRNA:   3'- -GGGCGGCC--UCGGa--GGugU-------------GCuGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 40533 0.66 0.397541
Target:  5'- gCCGCCGGAacguucgugaucGCCgagCUGCcCGACCUg- -3'
miRNA:   3'- gGGCGGCCU------------CGGa--GGUGuGCUGGAgc -5'
26426 3' -61.1 NC_005345.2 + 16168 0.66 0.397541
Target:  5'- -aCGCCGuaGGUCUCgCGCAgguCGGCCUCGa -3'
miRNA:   3'- ggGCGGCc-UCGGAG-GUGU---GCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 37909 0.66 0.397541
Target:  5'- aCgGCCGGAGUCgagUCAgCGCGuucgcggacGCCUCGa -3'
miRNA:   3'- gGgCGGCCUCGGa--GGU-GUGC---------UGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 7040 0.67 0.392325
Target:  5'- aCCgGCCGGcgaucgaggcggcccGGCCggaCUACGCGGCCg-- -3'
miRNA:   3'- -GGgCGGCC---------------UCGGa--GGUGUGCUGGagc -5'
26426 3' -61.1 NC_005345.2 + 48390 0.67 0.388872
Target:  5'- gCCgGCCGGGGCUaUCC-CACGAgcaCCgCGa -3'
miRNA:   3'- -GGgCGGCCUCGG-AGGuGUGCU---GGaGC- -5'
26426 3' -61.1 NC_005345.2 + 3078 0.67 0.388872
Target:  5'- cCCCGgCGGccccGGCCgCCugAuCGACcCUCGg -3'
miRNA:   3'- -GGGCgGCC----UCGGaGGugU-GCUG-GAGC- -5'
26426 3' -61.1 NC_005345.2 + 4940 0.67 0.380328
Target:  5'- uCCgGCCGGguggcGGUCacggagacCCACACGugCUCGc -3'
miRNA:   3'- -GGgCGGCC-----UCGGa-------GGUGUGCugGAGC- -5'
26426 3' -61.1 NC_005345.2 + 22496 0.67 0.380327
Target:  5'- --aGCCGGGuucGCCcaCCGCAccuCGGCCUCGg -3'
miRNA:   3'- gggCGGCCU---CGGa-GGUGU---GCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 12881 0.67 0.375262
Target:  5'- gCCGCCGGguGGCCgcucgccucgaucgCCGCgACGGCCg-- -3'
miRNA:   3'- gGGCGGCC--UCGGa-------------GGUG-UGCUGGagc -5'
26426 3' -61.1 NC_005345.2 + 14848 0.67 0.37191
Target:  5'- gCuuGCCGGgcugcagcgGGCgCUCgACGCGGCCgaggCGa -3'
miRNA:   3'- -GggCGGCC---------UCG-GAGgUGUGCUGGa---GC- -5'
26426 3' -61.1 NC_005345.2 + 43388 0.67 0.37191
Target:  5'- aCCUG-CGGAccGCCUCgGCGCaGuCCUCGg -3'
miRNA:   3'- -GGGCgGCCU--CGGAGgUGUG-CuGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 14227 0.67 0.37191
Target:  5'- cCUCGCCGccGcCCUCgCGCACGcCCUCu -3'
miRNA:   3'- -GGGCGGCcuC-GGAG-GUGUGCuGGAGc -5'
26426 3' -61.1 NC_005345.2 + 45310 0.67 0.36362
Target:  5'- --aGCCGGGuCCgcacgCCGC-CGACCUCGc -3'
miRNA:   3'- gggCGGCCUcGGa----GGUGuGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 47106 0.67 0.36362
Target:  5'- gCCCGCCGG-GCCgcgCCGgGCccgCUCGa -3'
miRNA:   3'- -GGGCGGCCuCGGa--GGUgUGcugGAGC- -5'
26426 3' -61.1 NC_005345.2 + 31773 0.67 0.36034
Target:  5'- aCCGCgGacggcaccgaguacGAGCCcgaccagUCCGC-CGACCUCGa -3'
miRNA:   3'- gGGCGgC--------------CUCGG-------AGGUGuGCUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.