Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26426 | 5' | -55.1 | NC_005345.2 | + | 12531 | 0.77 | 0.159123 |
Target: 5'- cGCGCAGCUCGCGgaGcgggcgcagcGCUGGCAGGu -3' miRNA: 3'- cCGUGUCGAGCGUgaC----------UGACUGUCCu -5' |
|||||||
26426 | 5' | -55.1 | NC_005345.2 | + | 12456 | 0.68 | 0.535704 |
Target: 5'- cGCGCAGCUCGCGg-GGCaGGCgAGGc -3' miRNA: 3'- cCGUGUCGAGCGUgaCUGaCUG-UCCu -5' |
|||||||
26426 | 5' | -55.1 | NC_005345.2 | + | 11984 | 0.68 | 0.579497 |
Target: 5'- cGGguCGGCUCGCGau--CcGGCAGGAa -3' miRNA: 3'- -CCguGUCGAGCGUgacuGaCUGUCCU- -5' |
|||||||
26426 | 5' | -55.1 | NC_005345.2 | + | 11589 | 0.68 | 0.578392 |
Target: 5'- gGGCGC--CUCGCGgUGgcguggggcggccGCUGGCGGGAg -3' miRNA: 3'- -CCGUGucGAGCGUgAC-------------UGACUGUCCU- -5' |
|||||||
26426 | 5' | -55.1 | NC_005345.2 | + | 6804 | 0.66 | 0.656374 |
Target: 5'- cGCACAGUUgGUAUgcggcggacgccaUGGCgGGCGGGAu -3' miRNA: 3'- cCGUGUCGAgCGUG-------------ACUGaCUGUCCU- -5' |
|||||||
26426 | 5' | -55.1 | NC_005345.2 | + | 3451 | 0.66 | 0.668616 |
Target: 5'- gGGCcCcgAGCUCGCGCgGGCUGuCGGa- -3' miRNA: 3'- -CCGuG--UCGAGCGUGaCUGACuGUCcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home