Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26427 | 3' | -55.1 | NC_005345.2 | + | 35843 | 0.74 | 0.27259 |
Target: 5'- gCG-CGGCGGGugGCUCGguucGGGCGggGg -3' miRNA: 3'- -GCaGCCGCUCugUGAGCa---CUCGCuaC- -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 36838 | 0.67 | 0.673344 |
Target: 5'- cCGaUCGGCGccgcgcacucgGGGCACUCGaucccGAGCGGa- -3' miRNA: 3'- -GC-AGCCGC-----------UCUGUGAGCa----CUCGCUac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 37337 | 0.66 | 0.716674 |
Target: 5'- --aCGGCGAuGACccguCUCG-GAGCGAg- -3' miRNA: 3'- gcaGCCGCU-CUGu---GAGCaCUCGCUac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 38409 | 0.66 | 0.705938 |
Target: 5'- gCGUCGGCGAcGACAUc---GAGCGcgGc -3' miRNA: 3'- -GCAGCCGCU-CUGUGagcaCUCGCuaC- -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 41646 | 0.73 | 0.309022 |
Target: 5'- gGUCGGCGAGcCACUccagCGUGAGgGGc- -3' miRNA: 3'- gCAGCCGCUCuGUGA----GCACUCgCUac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 43514 | 0.71 | 0.41104 |
Target: 5'- uCG-CGGCGAacccGGCGCUCGcgGAGCGGa- -3' miRNA: 3'- -GCaGCCGCU----CUGUGAGCa-CUCGCUac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 43738 | 0.76 | 0.21241 |
Target: 5'- -cUCGGCGAGACGCUCGgccgaccgccgggccUGAGUGGa- -3' miRNA: 3'- gcAGCCGCUCUGUGAGC---------------ACUCGCUac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 45026 | 1.09 | 0.000956 |
Target: 5'- aCGUCGGCGAGACACUCGUGAGCGAUGa -3' miRNA: 3'- -GCAGCCGCUCUGUGAGCACUCGCUAC- -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 47467 | 0.67 | 0.673344 |
Target: 5'- uGUCGGCGA--C-CU-GUGGGCGAUGc -3' miRNA: 3'- gCAGCCGCUcuGuGAgCACUCGCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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