Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26427 | 3' | -55.1 | NC_005345.2 | + | 45026 | 1.09 | 0.000956 |
Target: 5'- aCGUCGGCGAGACACUCGUGAGCGAUGa -3' miRNA: 3'- -GCAGCCGCUCUGUGAGCACUCGCUAC- -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 18192 | 0.77 | 0.194001 |
Target: 5'- cCGUCGGCGAGGCGCgCGccGAGUGGg- -3' miRNA: 3'- -GCAGCCGCUCUGUGaGCa-CUCGCUac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 43738 | 0.76 | 0.21241 |
Target: 5'- -cUCGGCGAGACGCUCGgccgaccgccgggccUGAGUGGa- -3' miRNA: 3'- gcAGCCGCUCUGUGAGC---------------ACUCGCUac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 35843 | 0.74 | 0.27259 |
Target: 5'- gCG-CGGCGGGugGCUCGguucGGGCGggGg -3' miRNA: 3'- -GCaGCCGCUCugUGAGCa---CUCGCuaC- -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 14328 | 0.74 | 0.301449 |
Target: 5'- aCGUCGGCGAGgggcaggcGCACggCGUGcGCGAg- -3' miRNA: 3'- -GCAGCCGCUC--------UGUGa-GCACuCGCUac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 41646 | 0.73 | 0.309022 |
Target: 5'- gGUCGGCGAGcCACUccagCGUGAGgGGc- -3' miRNA: 3'- gCAGCCGCUCuGUGA----GCACUCgCUac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 22690 | 0.72 | 0.349051 |
Target: 5'- aCGUCGGCGuuuGGCugaUCGUGAGC-AUGu -3' miRNA: 3'- -GCAGCCGCu--CUGug-AGCACUCGcUAC- -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 23928 | 0.72 | 0.357487 |
Target: 5'- cCGUCGugcGUGAGcucGCACUCGgcaGAGCGGUGu -3' miRNA: 3'- -GCAGC---CGCUC---UGUGAGCa--CUCGCUAC- -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 43514 | 0.71 | 0.41104 |
Target: 5'- uCG-CGGCGAacccGGCGCUCGcgGAGCGGa- -3' miRNA: 3'- -GCaGCCGCU----CUGUGAGCa-CUCGCUac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 18936 | 0.71 | 0.439618 |
Target: 5'- gCGUCGGCGucGACGuugauCUCGUGgcGGCGAg- -3' miRNA: 3'- -GCAGCCGCu-CUGU-----GAGCAC--UCGCUac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 3079 | 0.7 | 0.459286 |
Target: 5'- uGUCGGCGAgGACACUgG-GAaUGAUGg -3' miRNA: 3'- gCAGCCGCU-CUGUGAgCaCUcGCUAC- -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 12692 | 0.7 | 0.459286 |
Target: 5'- --aCGGCGAGagugGCGgUgGUGGGCGAUGc -3' miRNA: 3'- gcaGCCGCUC----UGUgAgCACUCGCUAC- -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 5585 | 0.7 | 0.479413 |
Target: 5'- aGUUGGCGAGGCGgUCGgcGAGCu--- -3' miRNA: 3'- gCAGCCGCUCUGUgAGCa-CUCGcuac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 28713 | 0.68 | 0.606283 |
Target: 5'- gCGUCGGacggaacCGAGACGCUCGUcGGGUu--- -3' miRNA: 3'- -GCAGCC-------GCUCUGUGAGCA-CUCGcuac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 29530 | 0.68 | 0.618378 |
Target: 5'- uCGUCGGCgucGAGGUACUCGgGGGCGu-- -3' miRNA: 3'- -GCAGCCG---CUCUGUGAGCaCUCGCuac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 17148 | 0.67 | 0.662386 |
Target: 5'- aCGUUGGuCGGGGCGgUCGUGccgacgggGGCGGc- -3' miRNA: 3'- -GCAGCC-GCUCUGUgAGCAC--------UCGCUac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 36838 | 0.67 | 0.673344 |
Target: 5'- cCGaUCGGCGccgcgcacucgGGGCACUCGaucccGAGCGGa- -3' miRNA: 3'- -GC-AGCCGC-----------UCUGUGAGCa----CUCGCUac -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 47467 | 0.67 | 0.673344 |
Target: 5'- uGUCGGCGA--C-CU-GUGGGCGAUGc -3' miRNA: 3'- gCAGCCGCUcuGuGAgCACUCGCUAC- -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 28132 | 0.66 | 0.680992 |
Target: 5'- uCGgCGGCGAGGgGguaugcgaaagcccCUCGgGAGCGGUGc -3' miRNA: 3'- -GCaGCCGCUCUgU--------------GAGCaCUCGCUAC- -5' |
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26427 | 3' | -55.1 | NC_005345.2 | + | 25532 | 0.66 | 0.684262 |
Target: 5'- gCGUaagCGGCaGGGGCAgCUCGacGAGUGGUGg -3' miRNA: 3'- -GCA---GCCG-CUCUGU-GAGCa-CUCGCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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