miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26427 5' -60.8 NC_005345.2 + 38593 0.66 0.437193
Target:  5'- cGGCAUCGUGGcGagcgccucggacaCGGCgaucucgacgucGGcCUCGGCGa -3'
miRNA:   3'- -CCGUAGCACC-Cg------------GCUGa-----------CC-GAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 7026 0.66 0.433461
Target:  5'- cGgGUCGccGGUCGACcGGC-CGGCGa -3'
miRNA:   3'- cCgUAGCacCCGGCUGaCCGaGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 37855 0.66 0.433461
Target:  5'- cGGUcgGUCGc-GGCCGGCgaGGCUCaGGCc -3'
miRNA:   3'- -CCG--UAGCacCCGGCUGa-CCGAG-CCGc -5'
26427 5' -60.8 NC_005345.2 + 22090 0.66 0.415083
Target:  5'- aGGUuccGUUGacGGUCGGC-GGCUCGGUGg -3'
miRNA:   3'- -CCG---UAGCacCCGGCUGaCCGAGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 16599 0.66 0.397192
Target:  5'- cGGUggCGUGGcCCGACccccucGGCgUCGGCa -3'
miRNA:   3'- -CCGuaGCACCcGGCUGa-----CCG-AGCCGc -5'
26427 5' -60.8 NC_005345.2 + 35771 0.66 0.397191
Target:  5'- gGGCGgggCgGUGGGUUcGgUGGCUCGGaCGa -3'
miRNA:   3'- -CCGUa--G-CACCCGGcUgACCGAGCC-GC- -5'
26427 5' -60.8 NC_005345.2 + 33705 0.66 0.391921
Target:  5'- cGGC-UCG-GGGCCGucgcgggcgagguguACgccaagGGCUaCGGCGa -3'
miRNA:   3'- -CCGuAGCaCCCGGC---------------UGa-----CCGA-GCCGC- -5'
26427 5' -60.8 NC_005345.2 + 2578 0.66 0.388433
Target:  5'- uGC-UCG-GGGCCGA--GGCUgaCGGCGa -3'
miRNA:   3'- cCGuAGCaCCCGGCUgaCCGA--GCCGC- -5'
26427 5' -60.8 NC_005345.2 + 48876 0.66 0.384966
Target:  5'- aGCAuUCGccGGCCGACgUGGCggcgaggugcgggCGGCGa -3'
miRNA:   3'- cCGU-AGCacCCGGCUG-ACCGa------------GCCGC- -5'
26427 5' -60.8 NC_005345.2 + 29947 0.67 0.371302
Target:  5'- cGGCucgacGUCG-GGGCCGuCgGGCUCGuCGu -3'
miRNA:   3'- -CCG-----UAGCaCCCGGCuGaCCGAGCcGC- -5'
26427 5' -60.8 NC_005345.2 + 4447 0.67 0.362932
Target:  5'- aGGUcgUGUGGaggcuCCGGCgggGGCcCGGCGg -3'
miRNA:   3'- -CCGuaGCACCc----GGCUGa--CCGaGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 20588 0.67 0.346588
Target:  5'- gGGCccaaaucCG-GGGCCGGCgGGCgcucgcaagucUCGGCGa -3'
miRNA:   3'- -CCGua-----GCaCCCGGCUGaCCG-----------AGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 11599 0.67 0.346588
Target:  5'- cGGUggCGUGGGgCGgccGCUGGCgggagugGGCGg -3'
miRNA:   3'- -CCGuaGCACCCgGC---UGACCGag-----CCGC- -5'
26427 5' -60.8 NC_005345.2 + 28525 0.67 0.338615
Target:  5'- cGCAgacguUCG-GGGgCGACgaucagucgUGGCUCGGCu -3'
miRNA:   3'- cCGU-----AGCaCCCgGCUG---------ACCGAGCCGc -5'
26427 5' -60.8 NC_005345.2 + 35907 0.68 0.323073
Target:  5'- cGGCAUCGUcGGG-UGGCUcgGGacgCGGCGa -3'
miRNA:   3'- -CCGUAGCA-CCCgGCUGA--CCga-GCCGC- -5'
26427 5' -60.8 NC_005345.2 + 2027 0.68 0.315504
Target:  5'- cGGCGuccUCGUcgagcGGGcCCGGCgcGGCcCGGCGg -3'
miRNA:   3'- -CCGU---AGCA-----CCC-GGCUGa-CCGaGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 15922 0.68 0.315504
Target:  5'- cGguUCGggGGGCCGGCUcuGCUCGuGUGa -3'
miRNA:   3'- cCguAGCa-CCCGGCUGAc-CGAGC-CGC- -5'
26427 5' -60.8 NC_005345.2 + 34935 0.68 0.314754
Target:  5'- cGGCggCGaGGGCCuGCUcGGCggacaccUCGGCGg -3'
miRNA:   3'- -CCGuaGCaCCCGGcUGA-CCG-------AGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 33471 0.68 0.30077
Target:  5'- cGGCAgaUCGgccGGCCGAC-GGUgcaggUCGGCGc -3'
miRNA:   3'- -CCGU--AGCac-CCGGCUGaCCG-----AGCCGC- -5'
26427 5' -60.8 NC_005345.2 + 35225 0.68 0.30077
Target:  5'- aGGCGgcCGUGGG-CGGCUGGUagucgucgaUgGGCGg -3'
miRNA:   3'- -CCGUa-GCACCCgGCUGACCG---------AgCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.